Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP1AQ9HD42 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP1AQ9HD42 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP1AQ9HD42 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
CHMP1AQ9HD42 AC027702.1-201ENST00000563810 1770 ntBASIC17.38■□□□□ 0.37
CHMP1AQ9HD42 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
CHMP1AQ9HD42 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP1AQ9HD42 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP1AQ9HD42 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC17.38■□□□□ 0.37
CHMP1AQ9HD42 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
CHMP1AQ9HD42 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC17.38■□□□□ 0.37
CHMP1AQ9HD42 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC17.38■□□□□ 0.37
CHMP1AQ9HD42 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP1AQ9HD42 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
CHMP1AQ9HD42 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP1AQ9HD42 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP1AQ9HD42 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP1AQ9HD42 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC17.38■□□□□ 0.37
CHMP1AQ9HD42 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP1AQ9HD42 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP1AQ9HD42 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CHMP1AQ9HD42 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
CHMP1AQ9HD42 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CHMP1AQ9HD42 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC17.37■□□□□ 0.37
CHMP1AQ9HD42 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC17.37■□□□□ 0.37
CHMP1AQ9HD42 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CHMP1AQ9HD42 MFF-207ENST00000409565 1548 ntTSL 2 BASIC17.37■□□□□ 0.37
CHMP1AQ9HD42 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC17.37■□□□□ 0.37
CHMP1AQ9HD42 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
CHMP1AQ9HD42 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CHMP1AQ9HD42 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
CHMP1AQ9HD42 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
CHMP1AQ9HD42 AC091305.1-201ENST00000479476 895 ntBASIC17.37■□□□□ 0.37
CHMP1AQ9HD42 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC17.37■□□□□ 0.37
CHMP1AQ9HD42 AC053503.5-201ENST00000601508 636 ntBASIC17.37■□□□□ 0.37
CHMP1AQ9HD42 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CHMP1AQ9HD42 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CHMP1AQ9HD42 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CHMP1AQ9HD42 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CHMP1AQ9HD42 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
CHMP1AQ9HD42 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC17.37■□□□□ 0.37
CHMP1AQ9HD42 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CHMP1AQ9HD42 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC17.36■□□□□ 0.37
CHMP1AQ9HD42 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CHMP1AQ9HD42 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC17.36■□□□□ 0.37
CHMP1AQ9HD42 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CHMP1AQ9HD42 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CHMP1AQ9HD42 AC020907.5-201ENST00000624372 1936 ntBASIC17.36■□□□□ 0.37
CHMP1AQ9HD42 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CHMP1AQ9HD42 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CHMP1AQ9HD42 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC17.36■□□□□ 0.37
CHMP1AQ9HD42 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC17.36■□□□□ 0.37
CHMP1AQ9HD42 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
CHMP1AQ9HD42 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
CHMP1AQ9HD42 BID-204ENST00000399767 2129 ntTSL 2 BASIC17.36■□□□□ 0.37
CHMP1AQ9HD42 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
CHMP1AQ9HD42 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
CHMP1AQ9HD42 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC17.36■□□□□ 0.37
CHMP1AQ9HD42 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CHMP1AQ9HD42 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CHMP1AQ9HD42 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CHMP1AQ9HD42 AC061975.6-201ENST00000579045 1553 ntBASIC17.36■□□□□ 0.37
CHMP1AQ9HD42 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CHMP1AQ9HD42 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC17.35■□□□□ 0.37
CHMP1AQ9HD42 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
CHMP1AQ9HD42 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CHMP1AQ9HD42 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC17.35■□□□□ 0.37
CHMP1AQ9HD42 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CHMP1AQ9HD42 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CHMP1AQ9HD42 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CHMP1AQ9HD42 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC17.35■□□□□ 0.37
CHMP1AQ9HD42 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CHMP1AQ9HD42 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CHMP1AQ9HD42 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CHMP1AQ9HD42 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC17.35■□□□□ 0.37
CHMP1AQ9HD42 EEF1DP3-203ENST00000566025 782 ntBASIC17.35■□□□□ 0.37
CHMP1AQ9HD42 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC17.35■□□□□ 0.37
CHMP1AQ9HD42 AC008175.2-201ENST00000612840 297 ntBASIC17.35■□□□□ 0.37
CHMP1AQ9HD42 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CHMP1AQ9HD42 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CHMP1AQ9HD42 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CHMP1AQ9HD42 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
CHMP1AQ9HD42 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CHMP1AQ9HD42 BID-203ENST00000399765 1879 ntTSL 2 BASIC17.35■□□□□ 0.37
CHMP1AQ9HD42 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CHMP1AQ9HD42 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CHMP1AQ9HD42 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CHMP1AQ9HD42 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
CHMP1AQ9HD42 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CHMP1AQ9HD42 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CHMP1AQ9HD42 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHMP1AQ9HD42 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
CHMP1AQ9HD42 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHMP1AQ9HD42 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHMP1AQ9HD42 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHMP1AQ9HD42 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
CHMP1AQ9HD42 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
CHMP1AQ9HD42 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
CHMP1AQ9HD42 MIR939-201ENST00000401314 82 ntBASIC17.34■□□□□ 0.37
CHMP1AQ9HD42 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms