Protein–RNA interactions for Protein: Q9BSE4

HERPUD2, Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2Q9BSE4 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
HERPUD2Q9BSE4 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
HERPUD2Q9BSE4 BRI3-207ENST00000539286 699 ntTSL 2 BASIC21.02■□□□□ 0.96
HERPUD2Q9BSE4 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HERPUD2Q9BSE4 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC21.02■□□□□ 0.96
HERPUD2Q9BSE4 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC21.02■□□□□ 0.96
HERPUD2Q9BSE4 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
HERPUD2Q9BSE4 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HERPUD2Q9BSE4 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HERPUD2Q9BSE4 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC21.02■□□□□ 0.96
HERPUD2Q9BSE4 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HERPUD2Q9BSE4 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
HERPUD2Q9BSE4 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
HERPUD2Q9BSE4 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC21.02■□□□□ 0.95
HERPUD2Q9BSE4 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
HERPUD2Q9BSE4 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC21.01■□□□□ 0.95
HERPUD2Q9BSE4 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HERPUD2Q9BSE4 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
HERPUD2Q9BSE4 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
HERPUD2Q9BSE4 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HERPUD2Q9BSE4 H19-201ENST00000411754 1788 ntTSL 5 BASIC21.01■□□□□ 0.95
HERPUD2Q9BSE4 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HERPUD2Q9BSE4 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC21.01■□□□□ 0.95
HERPUD2Q9BSE4 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HERPUD2Q9BSE4 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC21.01■□□□□ 0.95
HERPUD2Q9BSE4 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HERPUD2Q9BSE4 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC21.01■□□□□ 0.95
HERPUD2Q9BSE4 PLLP-204ENST00000569059 665 ntTSL 3 BASIC21.01■□□□□ 0.95
HERPUD2Q9BSE4 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HERPUD2Q9BSE4 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HERPUD2Q9BSE4 AC016405.3-201ENST00000607710 860 ntBASIC21.01■□□□□ 0.95
HERPUD2Q9BSE4 AC010536.3-201ENST00000620306 533 ntBASIC21.01■□□□□ 0.95
HERPUD2Q9BSE4 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
HERPUD2Q9BSE4 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HERPUD2Q9BSE4 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC21.01■□□□□ 0.95
HERPUD2Q9BSE4 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HERPUD2Q9BSE4 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
HERPUD2Q9BSE4 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC21■□□□□ 0.95
HERPUD2Q9BSE4 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC21■□□□□ 0.95
HERPUD2Q9BSE4 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC21■□□□□ 0.95
HERPUD2Q9BSE4 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC21■□□□□ 0.95
HERPUD2Q9BSE4 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC21■□□□□ 0.95
HERPUD2Q9BSE4 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC21■□□□□ 0.95
HERPUD2Q9BSE4 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HERPUD2Q9BSE4 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
HERPUD2Q9BSE4 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HERPUD2Q9BSE4 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC21■□□□□ 0.95
HERPUD2Q9BSE4 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
HERPUD2Q9BSE4 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC21■□□□□ 0.95
HERPUD2Q9BSE4 DBI-210ENST00000542275 757 ntTSL 5 BASIC21■□□□□ 0.95
HERPUD2Q9BSE4 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
HERPUD2Q9BSE4 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC21■□□□□ 0.95
HERPUD2Q9BSE4 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC21■□□□□ 0.95
HERPUD2Q9BSE4 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC21■□□□□ 0.95
HERPUD2Q9BSE4 IKBKGP1-201ENST00000612193 1073 ntBASIC21■□□□□ 0.95
HERPUD2Q9BSE4 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC21■□□□□ 0.95
HERPUD2Q9BSE4 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
HERPUD2Q9BSE4 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC21■□□□□ 0.95
HERPUD2Q9BSE4 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC21■□□□□ 0.95
HERPUD2Q9BSE4 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC21■□□□□ 0.95
HERPUD2Q9BSE4 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC21■□□□□ 0.95
HERPUD2Q9BSE4 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC21■□□□□ 0.95
HERPUD2Q9BSE4 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC21■□□□□ 0.95
HERPUD2Q9BSE4 AL158211.5-201ENST00000623583 2518 ntBASIC21■□□□□ 0.95
HERPUD2Q9BSE4 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC21■□□□□ 0.95
HERPUD2Q9BSE4 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HERPUD2Q9BSE4 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.99■□□□□ 0.95
HERPUD2Q9BSE4 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC20.99■□□□□ 0.95
HERPUD2Q9BSE4 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
HERPUD2Q9BSE4 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HERPUD2Q9BSE4 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HERPUD2Q9BSE4 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HERPUD2Q9BSE4 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC20.99■□□□□ 0.95
HERPUD2Q9BSE4 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
HERPUD2Q9BSE4 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HERPUD2Q9BSE4 TERF1P5-201ENST00000477545 1207 ntBASIC20.99■□□□□ 0.95
HERPUD2Q9BSE4 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HERPUD2Q9BSE4 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC20.99■□□□□ 0.95
HERPUD2Q9BSE4 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC20.99■□□□□ 0.95
HERPUD2Q9BSE4 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC20.99■□□□□ 0.95
HERPUD2Q9BSE4 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
HERPUD2Q9BSE4 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC20.99■□□□□ 0.95
HERPUD2Q9BSE4 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
HERPUD2Q9BSE4 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC20.99■□□□□ 0.95
HERPUD2Q9BSE4 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HERPUD2Q9BSE4 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
HERPUD2Q9BSE4 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HERPUD2Q9BSE4 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HERPUD2Q9BSE4 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.98■□□□□ 0.95
HERPUD2Q9BSE4 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HERPUD2Q9BSE4 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC20.98■□□□□ 0.95
HERPUD2Q9BSE4 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HERPUD2Q9BSE4 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
HERPUD2Q9BSE4 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HERPUD2Q9BSE4 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC20.98■□□□□ 0.95
HERPUD2Q9BSE4 AC092437.1-201ENST00000624794 1048 ntBASIC20.98■□□□□ 0.95
HERPUD2Q9BSE4 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HERPUD2Q9BSE4 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HERPUD2Q9BSE4 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC20.98■□□□□ 0.95
HERPUD2Q9BSE4 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms