Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
PTCHD1Q96NR3 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PTCHD1Q96NR3 NME6-213ENST00000451657 871 ntTSL 2 BASIC19.1■□□□□ 0.65
PTCHD1Q96NR3 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
PTCHD1Q96NR3 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
PTCHD1Q96NR3 KRT18P6-201ENST00000555540 1265 ntBASIC19.1■□□□□ 0.65
PTCHD1Q96NR3 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC19.1■□□□□ 0.65
PTCHD1Q96NR3 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC19.1■□□□□ 0.65
PTCHD1Q96NR3 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
PTCHD1Q96NR3 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC19.1■□□□□ 0.65
PTCHD1Q96NR3 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
PTCHD1Q96NR3 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PTCHD1Q96NR3 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC19.1■□□□□ 0.65
PTCHD1Q96NR3 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
PTCHD1Q96NR3 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
PTCHD1Q96NR3 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC19.1■□□□□ 0.65
PTCHD1Q96NR3 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PTCHD1Q96NR3 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PTCHD1Q96NR3 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
PTCHD1Q96NR3 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
PTCHD1Q96NR3 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PTCHD1Q96NR3 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PTCHD1Q96NR3 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PTCHD1Q96NR3 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
PTCHD1Q96NR3 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PTCHD1Q96NR3 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
PTCHD1Q96NR3 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC19.09■□□□□ 0.65
PTCHD1Q96NR3 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC19.09■□□□□ 0.65
PTCHD1Q96NR3 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC19.09■□□□□ 0.65
PTCHD1Q96NR3 AC083880.1-201ENST00000608266 535 ntBASIC19.09■□□□□ 0.65
PTCHD1Q96NR3 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC19.09■□□□□ 0.65
PTCHD1Q96NR3 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
PTCHD1Q96NR3 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.09■□□□□ 0.65
PTCHD1Q96NR3 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
PTCHD1Q96NR3 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
PTCHD1Q96NR3 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PTCHD1Q96NR3 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PTCHD1Q96NR3 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PTCHD1Q96NR3 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
PTCHD1Q96NR3 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PTCHD1Q96NR3 KRT8P36-201ENST00000489121 1440 ntBASIC19.08■□□□□ 0.65
PTCHD1Q96NR3 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC19.08■□□□□ 0.65
PTCHD1Q96NR3 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
PTCHD1Q96NR3 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
PTCHD1Q96NR3 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC19.08■□□□□ 0.65
PTCHD1Q96NR3 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
PTCHD1Q96NR3 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.08■□□□□ 0.65
PTCHD1Q96NR3 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC19.08■□□□□ 0.65
PTCHD1Q96NR3 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC19.08■□□□□ 0.65
PTCHD1Q96NR3 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
PTCHD1Q96NR3 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
PTCHD1Q96NR3 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
PTCHD1Q96NR3 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
PTCHD1Q96NR3 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
PTCHD1Q96NR3 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
PTCHD1Q96NR3 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC19.08■□□□□ 0.64
PTCHD1Q96NR3 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
PTCHD1Q96NR3 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
PTCHD1Q96NR3 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
PTCHD1Q96NR3 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.08■□□□□ 0.64
PTCHD1Q96NR3 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
PTCHD1Q96NR3 STK25-205ENST00000405883 1904 ntTSL 2 BASIC19.08■□□□□ 0.64
PTCHD1Q96NR3 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PTCHD1Q96NR3 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
PTCHD1Q96NR3 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
PTCHD1Q96NR3 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PTCHD1Q96NR3 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PTCHD1Q96NR3 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
PTCHD1Q96NR3 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC19.07■□□□□ 0.64
PTCHD1Q96NR3 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PTCHD1Q96NR3 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC19.07■□□□□ 0.64
PTCHD1Q96NR3 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC19.07■□□□□ 0.64
PTCHD1Q96NR3 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC19.07■□□□□ 0.64
PTCHD1Q96NR3 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC19.07■□□□□ 0.64
PTCHD1Q96NR3 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC19.07■□□□□ 0.64
PTCHD1Q96NR3 C2orf69P4-201ENST00000565394 541 ntBASIC19.07■□□□□ 0.64
PTCHD1Q96NR3 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
PTCHD1Q96NR3 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC19.07■□□□□ 0.64
PTCHD1Q96NR3 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
PTCHD1Q96NR3 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
PTCHD1Q96NR3 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
PTCHD1Q96NR3 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PTCHD1Q96NR3 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC19.07■□□□□ 0.64
PTCHD1Q96NR3 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
PTCHD1Q96NR3 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC19.07■□□□□ 0.64
PTCHD1Q96NR3 AC007225.1-201ENST00000566331 1836 ntBASIC19.07■□□□□ 0.64
PTCHD1Q96NR3 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
PTCHD1Q96NR3 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PTCHD1Q96NR3 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
PTCHD1Q96NR3 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PTCHD1Q96NR3 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
PTCHD1Q96NR3 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PTCHD1Q96NR3 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
PTCHD1Q96NR3 AL157384.1-201ENST00000445995 2473 ntBASIC19.06■□□□□ 0.64
PTCHD1Q96NR3 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PTCHD1Q96NR3 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC19.06■□□□□ 0.64
PTCHD1Q96NR3 GATS-209ENST00000454084 1030 ntTSL 3 BASIC19.06■□□□□ 0.64
PTCHD1Q96NR3 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC19.06■□□□□ 0.64
PTCHD1Q96NR3 CD99P1-205ENST00000527459 561 ntBASIC19.06■□□□□ 0.64
PTCHD1Q96NR3 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC19.06■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms