Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC15.71■□□□□ 0.11
CCDC140Q96MF4 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC15.71■□□□□ 0.11
CCDC140Q96MF4 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.1
CCDC140Q96MF4 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
CCDC140Q96MF4 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC15.71■□□□□ 0.1
CCDC140Q96MF4 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC140Q96MF4 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC140Q96MF4 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC140Q96MF4 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
CCDC140Q96MF4 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC140Q96MF4 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC140Q96MF4 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC140Q96MF4 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC15.7■□□□□ 0.1
CCDC140Q96MF4 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC15.7■□□□□ 0.1
CCDC140Q96MF4 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC140Q96MF4 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC140Q96MF4 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC140Q96MF4 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC15.7■□□□□ 0.1
CCDC140Q96MF4 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC15.7■□□□□ 0.1
CCDC140Q96MF4 AF201337.1-201ENST00000520239 748 ntBASIC15.7■□□□□ 0.1
CCDC140Q96MF4 AC105036.2-201ENST00000569468 176 ntBASIC15.7■□□□□ 0.1
CCDC140Q96MF4 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC15.7■□□□□ 0.1
CCDC140Q96MF4 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC140Q96MF4 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC140Q96MF4 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC140Q96MF4 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
CCDC140Q96MF4 SMG8-203ENST00000578922 2178 ntBASIC15.7■□□□□ 0.1
CCDC140Q96MF4 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC140Q96MF4 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC140Q96MF4 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC140Q96MF4 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC140Q96MF4 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC140Q96MF4 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC140Q96MF4 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC140Q96MF4 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
CCDC140Q96MF4 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC140Q96MF4 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC140Q96MF4 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC15.69■□□□□ 0.1
CCDC140Q96MF4 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC140Q96MF4 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
CCDC140Q96MF4 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC15.69■□□□□ 0.1
CCDC140Q96MF4 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC140Q96MF4 PHB2-213ENST00000546111 858 ntTSL 2 BASIC15.69■□□□□ 0.1
CCDC140Q96MF4 ISCU-212ENST00000547005 795 ntTSL 3 BASIC15.69■□□□□ 0.1
CCDC140Q96MF4 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC140Q96MF4 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC140Q96MF4 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC15.69■□□□□ 0.1
CCDC140Q96MF4 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC140Q96MF4 DPP3P2-201ENST00000416030 1696 ntBASIC15.69■□□□□ 0.1
CCDC140Q96MF4 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC15.69■□□□□ 0.1
CCDC140Q96MF4 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC140Q96MF4 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
CCDC140Q96MF4 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC140Q96MF4 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC140Q96MF4 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC140Q96MF4 KRT17P1-201ENST00000399211 1546 ntBASIC15.68■□□□□ 0.1
CCDC140Q96MF4 MKRN4P-201ENST00000444706 1521 ntBASIC15.68■□□□□ 0.1
CCDC140Q96MF4 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC15.68■□□□□ 0.1
CCDC140Q96MF4 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
CCDC140Q96MF4 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC15.68■□□□□ 0.1
CCDC140Q96MF4 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC15.68■□□□□ 0.1
CCDC140Q96MF4 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC15.68■□□□□ 0.1
CCDC140Q96MF4 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
CCDC140Q96MF4 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC15.68■□□□□ 0.1
CCDC140Q96MF4 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC15.68■□□□□ 0.1
CCDC140Q96MF4 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC140Q96MF4 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC140Q96MF4 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC140Q96MF4 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC140Q96MF4 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC140Q96MF4 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC140Q96MF4 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC140Q96MF4 METTL15-202ENST00000403099 795 ntTSL 5 BASIC15.68■□□□□ 0.1
CCDC140Q96MF4 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC15.68■□□□□ 0.1
CCDC140Q96MF4 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC15.68■□□□□ 0.1
CCDC140Q96MF4 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC15.68■□□□□ 0.1
CCDC140Q96MF4 PPP1R14BP3-201ENST00000509033 445 ntBASIC15.68■□□□□ 0.1
CCDC140Q96MF4 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC15.68■□□□□ 0.1
CCDC140Q96MF4 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC15.68■□□□□ 0.1
CCDC140Q96MF4 OAS3-207ENST00000551007 998 ntTSL 2 BASIC15.68■□□□□ 0.1
CCDC140Q96MF4 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC15.68■□□□□ 0.1
CCDC140Q96MF4 AL589743.5-201ENST00000616611 1050 ntBASIC15.68■□□□□ 0.1
CCDC140Q96MF4 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC140Q96MF4 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC15.68■□□□□ 0.1
CCDC140Q96MF4 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC140Q96MF4 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC140Q96MF4 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC140Q96MF4 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC15.68■□□□□ 0.1
CCDC140Q96MF4 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC140Q96MF4 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
CCDC140Q96MF4 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC140Q96MF4 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC15.67■□□□□ 0.1
CCDC140Q96MF4 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC140Q96MF4 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC140Q96MF4 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC140Q96MF4 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC15.67■□□□□ 0.1
CCDC140Q96MF4 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC15.67■□□□□ 0.1
CCDC140Q96MF4 AL121832.2-201ENST00000610979 668 ntBASIC15.67■□□□□ 0.1
CCDC140Q96MF4 MARS-234ENST00000630571 216 ntTSL 5 BASIC15.67■□□□□ 0.1
CCDC140Q96MF4 MARS-235ENST00000630803 183 ntTSL 3 BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms