Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
VRK3Q8IV63 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC19.85■□□□□ 0.77
VRK3Q8IV63 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC19.85■□□□□ 0.77
VRK3Q8IV63 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC19.85■□□□□ 0.77
VRK3Q8IV63 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
VRK3Q8IV63 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
VRK3Q8IV63 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VRK3Q8IV63 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC19.85■□□□□ 0.77
VRK3Q8IV63 SMG8-203ENST00000578922 2178 ntBASIC19.85■□□□□ 0.77
VRK3Q8IV63 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VRK3Q8IV63 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC19.85■□□□□ 0.77
VRK3Q8IV63 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VRK3Q8IV63 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
VRK3Q8IV63 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
VRK3Q8IV63 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
VRK3Q8IV63 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VRK3Q8IV63 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC19.84■□□□□ 0.77
VRK3Q8IV63 OR2A1-AS1-201ENST00000462305 773 ntBASIC19.84■□□□□ 0.77
VRK3Q8IV63 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC19.84■□□□□ 0.77
VRK3Q8IV63 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC19.84■□□□□ 0.77
VRK3Q8IV63 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
VRK3Q8IV63 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
VRK3Q8IV63 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
VRK3Q8IV63 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.84■□□□□ 0.77
VRK3Q8IV63 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC19.84■□□□□ 0.77
VRK3Q8IV63 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VRK3Q8IV63 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VRK3Q8IV63 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC19.84■□□□□ 0.77
VRK3Q8IV63 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC19.83■□□□□ 0.77
VRK3Q8IV63 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
VRK3Q8IV63 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.83■□□□□ 0.77
VRK3Q8IV63 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
VRK3Q8IV63 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
VRK3Q8IV63 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC19.83■□□□□ 0.77
VRK3Q8IV63 ID1-201ENST00000376105 1233 ntBASIC19.83■□□□□ 0.77
VRK3Q8IV63 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
VRK3Q8IV63 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC19.83■□□□□ 0.77
VRK3Q8IV63 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC19.83■□□□□ 0.77
VRK3Q8IV63 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC19.83■□□□□ 0.77
VRK3Q8IV63 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
VRK3Q8IV63 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
VRK3Q8IV63 DPP3P2-201ENST00000416030 1696 ntBASIC19.83■□□□□ 0.76
VRK3Q8IV63 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
VRK3Q8IV63 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC19.83■□□□□ 0.76
VRK3Q8IV63 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC19.83■□□□□ 0.76
VRK3Q8IV63 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC19.83■□□□□ 0.76
VRK3Q8IV63 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.83■□□□□ 0.76
VRK3Q8IV63 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.83■□□□□ 0.76
VRK3Q8IV63 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
VRK3Q8IV63 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
VRK3Q8IV63 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VRK3Q8IV63 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC19.82■□□□□ 0.76
VRK3Q8IV63 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VRK3Q8IV63 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.82■□□□□ 0.76
VRK3Q8IV63 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
VRK3Q8IV63 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
VRK3Q8IV63 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
VRK3Q8IV63 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VRK3Q8IV63 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
VRK3Q8IV63 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VRK3Q8IV63 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC19.82■□□□□ 0.76
VRK3Q8IV63 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC19.82■□□□□ 0.76
VRK3Q8IV63 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC19.82■□□□□ 0.76
VRK3Q8IV63 PFKL-212ENST00000628044 129 ntTSL 3 BASIC19.82■□□□□ 0.76
VRK3Q8IV63 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
VRK3Q8IV63 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC19.82■□□□□ 0.76
VRK3Q8IV63 H19-201ENST00000411754 1788 ntTSL 5 BASIC19.82■□□□□ 0.76
VRK3Q8IV63 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC19.82■□□□□ 0.76
VRK3Q8IV63 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VRK3Q8IV63 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC19.82■□□□□ 0.76
VRK3Q8IV63 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
VRK3Q8IV63 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VRK3Q8IV63 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC19.81■□□□□ 0.76
VRK3Q8IV63 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VRK3Q8IV63 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VRK3Q8IV63 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
VRK3Q8IV63 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.81■□□□□ 0.76
VRK3Q8IV63 AL162377.1-201ENST00000618844 1793 ntBASIC19.81■□□□□ 0.76
VRK3Q8IV63 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VRK3Q8IV63 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
VRK3Q8IV63 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VRK3Q8IV63 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
VRK3Q8IV63 DUSP5P2-201ENST00000426873 1033 ntBASIC19.81■□□□□ 0.76
VRK3Q8IV63 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC19.81■□□□□ 0.76
VRK3Q8IV63 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC19.81■□□□□ 0.76
VRK3Q8IV63 AC092118.2-201ENST00000613495 667 ntBASIC19.81■□□□□ 0.76
VRK3Q8IV63 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
VRK3Q8IV63 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC19.81■□□□□ 0.76
VRK3Q8IV63 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC19.81■□□□□ 0.76
VRK3Q8IV63 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VRK3Q8IV63 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
VRK3Q8IV63 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
VRK3Q8IV63 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC19.81■□□□□ 0.76
VRK3Q8IV63 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
VRK3Q8IV63 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VRK3Q8IV63 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
VRK3Q8IV63 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VRK3Q8IV63 AL391422.3-201ENST00000603791 2761 ntBASIC19.8■□□□□ 0.76
VRK3Q8IV63 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
VRK3Q8IV63 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms