Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
RNFT1Q5M7Z0 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC18.32■□□□□ 0.52
RNFT1Q5M7Z0 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RNFT1Q5M7Z0 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RNFT1Q5M7Z0 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC18.32■□□□□ 0.52
RNFT1Q5M7Z0 RER1-204ENST00000378518 522 ntTSL 3 BASIC18.32■□□□□ 0.52
RNFT1Q5M7Z0 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC18.32■□□□□ 0.52
RNFT1Q5M7Z0 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RNFT1Q5M7Z0 TK2-204ENST00000525974 1178 ntTSL 2 BASIC18.32■□□□□ 0.52
RNFT1Q5M7Z0 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC18.32■□□□□ 0.52
RNFT1Q5M7Z0 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC18.32■□□□□ 0.52
RNFT1Q5M7Z0 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC18.32■□□□□ 0.52
RNFT1Q5M7Z0 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC18.32■□□□□ 0.52
RNFT1Q5M7Z0 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RNFT1Q5M7Z0 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RNFT1Q5M7Z0 AC124016.1-201ENST00000609552 612 ntBASIC18.32■□□□□ 0.52
RNFT1Q5M7Z0 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC18.32■□□□□ 0.52
RNFT1Q5M7Z0 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
RNFT1Q5M7Z0 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RNFT1Q5M7Z0 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC18.32■□□□□ 0.52
RNFT1Q5M7Z0 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RNFT1Q5M7Z0 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
RNFT1Q5M7Z0 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
RNFT1Q5M7Z0 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC18.31■□□□□ 0.52
RNFT1Q5M7Z0 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RNFT1Q5M7Z0 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
RNFT1Q5M7Z0 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC18.31■□□□□ 0.52
RNFT1Q5M7Z0 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RNFT1Q5M7Z0 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RNFT1Q5M7Z0 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RNFT1Q5M7Z0 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RNFT1Q5M7Z0 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC18.31■□□□□ 0.52
RNFT1Q5M7Z0 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RNFT1Q5M7Z0 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RNFT1Q5M7Z0 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RNFT1Q5M7Z0 HES2-206ENST00000489730 730 ntTSL 2 BASIC18.31■□□□□ 0.52
RNFT1Q5M7Z0 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC18.31■□□□□ 0.52
RNFT1Q5M7Z0 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RNFT1Q5M7Z0 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC18.31■□□□□ 0.52
RNFT1Q5M7Z0 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
RNFT1Q5M7Z0 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RNFT1Q5M7Z0 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RNFT1Q5M7Z0 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RNFT1Q5M7Z0 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC18.3■□□□□ 0.52
RNFT1Q5M7Z0 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RNFT1Q5M7Z0 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RNFT1Q5M7Z0 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
RNFT1Q5M7Z0 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RNFT1Q5M7Z0 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RNFT1Q5M7Z0 AF106564.1-201ENST00000607058 2553 ntBASIC18.3■□□□□ 0.52
RNFT1Q5M7Z0 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RNFT1Q5M7Z0 MIR718-201ENST00000390190 70 ntBASIC18.3■□□□□ 0.52
RNFT1Q5M7Z0 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC18.3■□□□□ 0.52
RNFT1Q5M7Z0 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC18.3■□□□□ 0.52
RNFT1Q5M7Z0 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RNFT1Q5M7Z0 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RNFT1Q5M7Z0 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
RNFT1Q5M7Z0 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RNFT1Q5M7Z0 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
RNFT1Q5M7Z0 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
RNFT1Q5M7Z0 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RNFT1Q5M7Z0 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
RNFT1Q5M7Z0 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
RNFT1Q5M7Z0 AC133681.1-201ENST00000465482 601 ntBASIC18.29■□□□□ 0.52
RNFT1Q5M7Z0 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
RNFT1Q5M7Z0 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC18.29■□□□□ 0.52
RNFT1Q5M7Z0 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC18.29■□□□□ 0.52
RNFT1Q5M7Z0 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC18.29■□□□□ 0.52
RNFT1Q5M7Z0 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC18.29■□□□□ 0.52
RNFT1Q5M7Z0 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
RNFT1Q5M7Z0 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
RNFT1Q5M7Z0 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC18.29■□□□□ 0.52
RNFT1Q5M7Z0 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
RNFT1Q5M7Z0 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RNFT1Q5M7Z0 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RNFT1Q5M7Z0 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RNFT1Q5M7Z0 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
RNFT1Q5M7Z0 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC18.28■□□□□ 0.52
RNFT1Q5M7Z0 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RNFT1Q5M7Z0 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RNFT1Q5M7Z0 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
RNFT1Q5M7Z0 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RNFT1Q5M7Z0 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RNFT1Q5M7Z0 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RNFT1Q5M7Z0 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RNFT1Q5M7Z0 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RNFT1Q5M7Z0 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RNFT1Q5M7Z0 AC239809.2-201ENST00000415381 517 ntBASIC18.28■□□□□ 0.52
RNFT1Q5M7Z0 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RNFT1Q5M7Z0 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
RNFT1Q5M7Z0 SNORA78-201ENST00000459373 127 ntBASIC18.28■□□□□ 0.52
RNFT1Q5M7Z0 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC18.28■□□□□ 0.52
RNFT1Q5M7Z0 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC18.28■□□□□ 0.52
RNFT1Q5M7Z0 MIR4497-201ENST00000583208 89 ntBASIC18.28■□□□□ 0.52
RNFT1Q5M7Z0 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RNFT1Q5M7Z0 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC18.28■□□□□ 0.52
RNFT1Q5M7Z0 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
RNFT1Q5M7Z0 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
RNFT1Q5M7Z0 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
RNFT1Q5M7Z0 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms