Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
USP39Q53GS9 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
USP39Q53GS9 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
USP39Q53GS9 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
USP39Q53GS9 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
USP39Q53GS9 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
USP39Q53GS9 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
USP39Q53GS9 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC20.6■□□□□ 0.89
USP39Q53GS9 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC20.6■□□□□ 0.89
USP39Q53GS9 AC233702.5-201ENST00000584107 538 ntBASIC20.6■□□□□ 0.89
USP39Q53GS9 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC20.6■□□□□ 0.89
USP39Q53GS9 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
USP39Q53GS9 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
USP39Q53GS9 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
USP39Q53GS9 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
USP39Q53GS9 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC20.6■□□□□ 0.89
USP39Q53GS9 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.6■□□□□ 0.89
USP39Q53GS9 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.59■□□□□ 0.89
USP39Q53GS9 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.59■□□□□ 0.89
USP39Q53GS9 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC20.59■□□□□ 0.89
USP39Q53GS9 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC20.59■□□□□ 0.89
USP39Q53GS9 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
USP39Q53GS9 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP39Q53GS9 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP39Q53GS9 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
USP39Q53GS9 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP39Q53GS9 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
USP39Q53GS9 RPS2P55-201ENST00000397318 883 ntBASIC20.59■□□□□ 0.89
USP39Q53GS9 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
USP39Q53GS9 AC107956.1-201ENST00000494359 873 ntBASIC20.59■□□□□ 0.89
USP39Q53GS9 RPS20-210ENST00000523936 899 ntTSL 2 BASIC20.59■□□□□ 0.89
USP39Q53GS9 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC20.59■□□□□ 0.89
USP39Q53GS9 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC20.59■□□□□ 0.89
USP39Q53GS9 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP39Q53GS9 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.59■□□□□ 0.89
USP39Q53GS9 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP39Q53GS9 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP39Q53GS9 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP39Q53GS9 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.59■□□□□ 0.89
USP39Q53GS9 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
USP39Q53GS9 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.58■□□□□ 0.89
USP39Q53GS9 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
USP39Q53GS9 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC20.58■□□□□ 0.89
USP39Q53GS9 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
USP39Q53GS9 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.58■□□□□ 0.89
USP39Q53GS9 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
USP39Q53GS9 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
USP39Q53GS9 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
USP39Q53GS9 GGT1-206ENST00000404223 952 ntTSL 2 BASIC20.58■□□□□ 0.89
USP39Q53GS9 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
USP39Q53GS9 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
USP39Q53GS9 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC20.58■□□□□ 0.89
USP39Q53GS9 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
USP39Q53GS9 MTDHP1-201ENST00000605323 784 ntBASIC20.58■□□□□ 0.89
USP39Q53GS9 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC20.58■□□□□ 0.89
USP39Q53GS9 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
USP39Q53GS9 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
USP39Q53GS9 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
USP39Q53GS9 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
USP39Q53GS9 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
USP39Q53GS9 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
USP39Q53GS9 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
USP39Q53GS9 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
USP39Q53GS9 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
USP39Q53GS9 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.88
USP39Q53GS9 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP39Q53GS9 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC20.57■□□□□ 0.88
USP39Q53GS9 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
USP39Q53GS9 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
USP39Q53GS9 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP39Q53GS9 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP39Q53GS9 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
USP39Q53GS9 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
USP39Q53GS9 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
USP39Q53GS9 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC20.57■□□□□ 0.88
USP39Q53GS9 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC20.57■□□□□ 0.88
USP39Q53GS9 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC20.57■□□□□ 0.88
USP39Q53GS9 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
USP39Q53GS9 ABHD17AP6-201ENST00000458502 1044 ntBASIC20.57■□□□□ 0.88
USP39Q53GS9 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC20.57■□□□□ 0.88
USP39Q53GS9 THEM4-205ENST00000489410 643 ntTSL 2 BASIC20.57■□□□□ 0.88
USP39Q53GS9 LY6E-205ENST00000519611 635 ntTSL 3 BASIC20.57■□□□□ 0.88
USP39Q53GS9 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC20.57■□□□□ 0.88
USP39Q53GS9 BX088651.1-201ENST00000540551 451 ntBASIC20.57■□□□□ 0.88
USP39Q53GS9 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
USP39Q53GS9 AL135905.2-201ENST00000584934 1404 ntBASIC20.57■□□□□ 0.88
USP39Q53GS9 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
USP39Q53GS9 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP39Q53GS9 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
USP39Q53GS9 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
USP39Q53GS9 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP39Q53GS9 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.57■□□□□ 0.88
USP39Q53GS9 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP39Q53GS9 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP39Q53GS9 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC20.57■□□□□ 0.88
USP39Q53GS9 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC20.56■□□□□ 0.88
USP39Q53GS9 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
USP39Q53GS9 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC20.56■□□□□ 0.88
USP39Q53GS9 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
USP39Q53GS9 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 58.7 ms