Protein–RNA interactions for Protein: Q53F19

NCBP3, Nuclear cap-binding protein subunit 3, humanhuman

Known RBP Predictions only

Length 620 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NCBP3Q53F19 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC26.54■■□□□ 1.84
NCBP3Q53F19 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC26.54■■□□□ 1.84
NCBP3Q53F19 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
NCBP3Q53F19 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
NCBP3Q53F19 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC26.53■■□□□ 1.84
NCBP3Q53F19 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC26.53■■□□□ 1.84
NCBP3Q53F19 HES2-205ENST00000487437 968 ntTSL 3 BASIC26.53■■□□□ 1.84
NCBP3Q53F19 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC26.53■■□□□ 1.84
NCBP3Q53F19 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
NCBP3Q53F19 ETFRF1-205ENST00000555711 783 ntTSL 3 BASIC26.53■■□□□ 1.84
NCBP3Q53F19 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC26.53■■□□□ 1.84
NCBP3Q53F19 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC26.53■■□□□ 1.84
NCBP3Q53F19 MYC-209ENST00000641252 345 ntBASIC26.53■■□□□ 1.84
NCBP3Q53F19 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
NCBP3Q53F19 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
NCBP3Q53F19 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC26.53■■□□□ 1.84
NCBP3Q53F19 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC26.53■■□□□ 1.84
NCBP3Q53F19 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC26.52■■□□□ 1.84
NCBP3Q53F19 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC26.52■■□□□ 1.84
NCBP3Q53F19 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC26.52■■□□□ 1.84
NCBP3Q53F19 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC26.52■■□□□ 1.84
NCBP3Q53F19 BX276092.2-201ENST00000417668 665 ntBASIC26.52■■□□□ 1.84
NCBP3Q53F19 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC26.52■■□□□ 1.84
NCBP3Q53F19 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
NCBP3Q53F19 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC26.52■■□□□ 1.84
NCBP3Q53F19 AC023632.3-201ENST00000521633 145 ntBASIC26.52■■□□□ 1.84
NCBP3Q53F19 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC26.52■■□□□ 1.84
NCBP3Q53F19 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC26.52■■□□□ 1.84
NCBP3Q53F19 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC26.52■■□□□ 1.84
NCBP3Q53F19 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC26.52■■□□□ 1.84
NCBP3Q53F19 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
NCBP3Q53F19 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
NCBP3Q53F19 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC26.51■■□□□ 1.83
NCBP3Q53F19 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
NCBP3Q53F19 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
NCBP3Q53F19 LSM12P1-201ENST00000411836 588 ntBASIC26.51■■□□□ 1.83
NCBP3Q53F19 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC26.51■■□□□ 1.83
NCBP3Q53F19 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC26.51■■□□□ 1.83
NCBP3Q53F19 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC26.51■■□□□ 1.83
NCBP3Q53F19 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC26.51■■□□□ 1.83
NCBP3Q53F19 AC060766.1-201ENST00000590824 627 ntBASIC26.51■■□□□ 1.83
NCBP3Q53F19 LINC01670-203ENST00000624859 977 ntTSL 3 BASIC26.51■■□□□ 1.83
NCBP3Q53F19 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC26.51■■□□□ 1.83
NCBP3Q53F19 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC26.51■■□□□ 1.83
NCBP3Q53F19 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC26.51■■□□□ 1.83
NCBP3Q53F19 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC26.51■■□□□ 1.83
NCBP3Q53F19 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
NCBP3Q53F19 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
NCBP3Q53F19 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
NCBP3Q53F19 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC26.5■■□□□ 1.83
NCBP3Q53F19 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
NCBP3Q53F19 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
NCBP3Q53F19 PHB2-213ENST00000546111 858 ntTSL 2 BASIC26.5■■□□□ 1.83
NCBP3Q53F19 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC26.5■■□□□ 1.83
NCBP3Q53F19 MIR4758-201ENST00000577688 71 ntBASIC26.5■■□□□ 1.83
NCBP3Q53F19 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC26.5■■□□□ 1.83
NCBP3Q53F19 AP000240.1-201ENST00000609910 452 ntBASIC26.5■■□□□ 1.83
NCBP3Q53F19 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC26.5■■□□□ 1.83
NCBP3Q53F19 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
NCBP3Q53F19 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC26.49■■□□□ 1.83
NCBP3Q53F19 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
NCBP3Q53F19 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC26.49■■□□□ 1.83
NCBP3Q53F19 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC26.49■■□□□ 1.83
NCBP3Q53F19 H19-201ENST00000411754 1788 ntTSL 5 BASIC26.49■■□□□ 1.83
NCBP3Q53F19 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC26.49■■□□□ 1.83
NCBP3Q53F19 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
NCBP3Q53F19 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC26.49■■□□□ 1.83
NCBP3Q53F19 SLC29A4P1-201ENST00000398760 971 ntBASIC26.49■■□□□ 1.83
NCBP3Q53F19 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
NCBP3Q53F19 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC26.49■■□□□ 1.83
NCBP3Q53F19 AC091874.3-201ENST00000512672 1195 ntBASIC26.49■■□□□ 1.83
NCBP3Q53F19 AC104771.1-201ENST00000603335 964 ntBASIC26.49■■□□□ 1.83
NCBP3Q53F19 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
NCBP3Q53F19 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC26.49■■□□□ 1.83
NCBP3Q53F19 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
NCBP3Q53F19 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
NCBP3Q53F19 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
NCBP3Q53F19 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC26.48■■□□□ 1.83
NCBP3Q53F19 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC26.48■■□□□ 1.83
NCBP3Q53F19 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC26.48■■□□□ 1.83
NCBP3Q53F19 PPP1R14BP2-201ENST00000426284 444 ntBASIC26.48■■□□□ 1.83
NCBP3Q53F19 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC26.48■■□□□ 1.83
NCBP3Q53F19 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC26.48■■□□□ 1.83
NCBP3Q53F19 WT1-AS_3.1-201ENST00000613262 234 ntBASIC26.48■■□□□ 1.83
NCBP3Q53F19 GXYLT1P5-201ENST00000614548 1189 ntBASIC26.48■■□□□ 1.83
NCBP3Q53F19 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC26.48■■□□□ 1.83
NCBP3Q53F19 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC26.48■■□□□ 1.83
NCBP3Q53F19 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC26.48■■□□□ 1.83
NCBP3Q53F19 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC26.48■■□□□ 1.83
NCBP3Q53F19 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
NCBP3Q53F19 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC26.48■■□□□ 1.83
NCBP3Q53F19 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
NCBP3Q53F19 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
NCBP3Q53F19 STK25-205ENST00000405883 1904 ntTSL 2 BASIC26.47■■□□□ 1.83
NCBP3Q53F19 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
NCBP3Q53F19 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC26.47■■□□□ 1.83
NCBP3Q53F19 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
NCBP3Q53F19 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
NCBP3Q53F19 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
NCBP3Q53F19 AL109923.1-201ENST00000618799 583 ntBASIC26.47■■□□□ 1.83
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms