Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIM2P55344 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIM2P55344 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.25■□□□□ 0.67
LIM2P55344 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIM2P55344 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
LIM2P55344 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIM2P55344 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIM2P55344 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIM2P55344 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
LIM2P55344 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LIM2P55344 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
LIM2P55344 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC19.25■□□□□ 0.67
LIM2P55344 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC19.25■□□□□ 0.67
LIM2P55344 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
LIM2P55344 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIM2P55344 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIM2P55344 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIM2P55344 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC19.24■□□□□ 0.67
LIM2P55344 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC19.24■□□□□ 0.67
LIM2P55344 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
LIM2P55344 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC19.24■□□□□ 0.67
LIM2P55344 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LIM2P55344 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
LIM2P55344 SLC29A4P1-201ENST00000398760 971 ntBASIC19.24■□□□□ 0.67
LIM2P55344 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC19.24■□□□□ 0.67
LIM2P55344 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
LIM2P55344 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC19.24■□□□□ 0.67
LIM2P55344 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC19.24■□□□□ 0.67
LIM2P55344 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC19.24■□□□□ 0.67
LIM2P55344 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC19.24■□□□□ 0.67
LIM2P55344 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
LIM2P55344 AC105020.6-201ENST00000621523 1217 ntBASIC19.24■□□□□ 0.67
LIM2P55344 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC19.24■□□□□ 0.67
LIM2P55344 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC19.24■□□□□ 0.67
LIM2P55344 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC19.24■□□□□ 0.67
LIM2P55344 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LIM2P55344 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIM2P55344 KRT17P1-201ENST00000399211 1546 ntBASIC19.24■□□□□ 0.67
LIM2P55344 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC19.24■□□□□ 0.67
LIM2P55344 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIM2P55344 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
LIM2P55344 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIM2P55344 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.24■□□□□ 0.67
LIM2P55344 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LIM2P55344 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIM2P55344 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIM2P55344 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIM2P55344 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIM2P55344 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIM2P55344 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
LIM2P55344 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
LIM2P55344 BX276092.2-201ENST00000417668 665 ntBASIC19.23■□□□□ 0.67
LIM2P55344 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIM2P55344 AL109923.1-201ENST00000618799 583 ntBASIC19.23■□□□□ 0.67
LIM2P55344 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC19.23■□□□□ 0.67
LIM2P55344 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
LIM2P55344 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC19.23■□□□□ 0.67
LIM2P55344 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
LIM2P55344 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIM2P55344 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIM2P55344 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.23■□□□□ 0.67
LIM2P55344 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIM2P55344 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIM2P55344 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC19.23■□□□□ 0.67
LIM2P55344 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19.22■□□□□ 0.67
LIM2P55344 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
LIM2P55344 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
LIM2P55344 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIM2P55344 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LIM2P55344 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC19.22■□□□□ 0.67
LIM2P55344 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIM2P55344 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIM2P55344 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC19.22■□□□□ 0.67
LIM2P55344 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIM2P55344 MIPEPP3-201ENST00000412105 444 ntBASIC19.22■□□□□ 0.67
LIM2P55344 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC19.22■□□□□ 0.67
LIM2P55344 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC19.22■□□□□ 0.67
LIM2P55344 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC19.22■□□□□ 0.67
LIM2P55344 AL589743.5-201ENST00000616611 1050 ntBASIC19.22■□□□□ 0.67
LIM2P55344 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC19.22■□□□□ 0.67
LIM2P55344 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIM2P55344 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC19.22■□□□□ 0.67
LIM2P55344 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIM2P55344 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC19.22■□□□□ 0.67
LIM2P55344 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
LIM2P55344 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
LIM2P55344 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIM2P55344 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIM2P55344 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIM2P55344 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIM2P55344 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIM2P55344 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIM2P55344 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIM2P55344 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIM2P55344 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC19.21■□□□□ 0.67
LIM2P55344 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
LIM2P55344 LSM12P1-201ENST00000411836 588 ntBASIC19.21■□□□□ 0.67
LIM2P55344 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC19.21■□□□□ 0.67
LIM2P55344 AC104771.1-201ENST00000603335 964 ntBASIC19.21■□□□□ 0.67
LIM2P55344 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms