Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
HMGCS2P54868 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC23.55■■□□□ 1.36
HMGCS2P54868 AC010331.1-201ENST00000611423 582 ntBASIC23.55■■□□□ 1.36
HMGCS2P54868 SNX21-213ENST00000614929 587 ntTSL 5 BASIC23.55■■□□□ 1.36
HMGCS2P54868 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
HMGCS2P54868 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
HMGCS2P54868 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
HMGCS2P54868 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
HMGCS2P54868 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
HMGCS2P54868 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
HMGCS2P54868 STAC-204ENST00000457375 1366 ntTSL 2 BASIC23.54■■□□□ 1.36
HMGCS2P54868 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
HMGCS2P54868 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC23.54■■□□□ 1.36
HMGCS2P54868 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
HMGCS2P54868 AC027702.1-201ENST00000563810 1770 ntBASIC23.54■■□□□ 1.36
HMGCS2P54868 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC23.54■■□□□ 1.36
HMGCS2P54868 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
HMGCS2P54868 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC23.54■■□□□ 1.36
HMGCS2P54868 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC23.53■■□□□ 1.36
HMGCS2P54868 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC23.53■■□□□ 1.36
HMGCS2P54868 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
HMGCS2P54868 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC23.53■■□□□ 1.36
HMGCS2P54868 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
HMGCS2P54868 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC23.53■■□□□ 1.36
HMGCS2P54868 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC23.53■■□□□ 1.36
HMGCS2P54868 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC23.53■■□□□ 1.36
HMGCS2P54868 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
HMGCS2P54868 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC23.53■■□□□ 1.36
HMGCS2P54868 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC23.53■■□□□ 1.36
HMGCS2P54868 AL121829.2-201ENST00000620908 328 ntBASIC23.53■■□□□ 1.36
HMGCS2P54868 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
HMGCS2P54868 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC23.53■■□□□ 1.36
HMGCS2P54868 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC23.53■■□□□ 1.36
HMGCS2P54868 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
HMGCS2P54868 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC23.53■■□□□ 1.36
HMGCS2P54868 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC23.52■■□□□ 1.36
HMGCS2P54868 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
HMGCS2P54868 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC23.52■■□□□ 1.36
HMGCS2P54868 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC23.52■■□□□ 1.36
HMGCS2P54868 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
HMGCS2P54868 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
HMGCS2P54868 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
HMGCS2P54868 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
HMGCS2P54868 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC23.52■■□□□ 1.36
HMGCS2P54868 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC23.52■■□□□ 1.36
HMGCS2P54868 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC23.52■■□□□ 1.36
HMGCS2P54868 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC23.52■■□□□ 1.36
HMGCS2P54868 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC23.52■■□□□ 1.36
HMGCS2P54868 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC23.52■■□□□ 1.36
HMGCS2P54868 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
HMGCS2P54868 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
HMGCS2P54868 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
HMGCS2P54868 AC244015.2-201ENST00000616358 1861 ntBASIC23.51■■□□□ 1.35
HMGCS2P54868 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC23.51■■□□□ 1.35
HMGCS2P54868 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC23.51■■□□□ 1.35
HMGCS2P54868 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
HMGCS2P54868 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
HMGCS2P54868 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
HMGCS2P54868 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC23.51■■□□□ 1.35
HMGCS2P54868 SAPCD2P4-201ENST00000424595 1171 ntBASIC23.51■■□□□ 1.35
HMGCS2P54868 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC23.51■■□□□ 1.35
HMGCS2P54868 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
HMGCS2P54868 AC023632.3-201ENST00000521633 145 ntBASIC23.51■■□□□ 1.35
HMGCS2P54868 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
HMGCS2P54868 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC23.51■■□□□ 1.35
HMGCS2P54868 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
HMGCS2P54868 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC23.51■■□□□ 1.35
HMGCS2P54868 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
HMGCS2P54868 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC23.51■■□□□ 1.35
HMGCS2P54868 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC23.51■■□□□ 1.35
HMGCS2P54868 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC23.51■■□□□ 1.35
HMGCS2P54868 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC23.5■■□□□ 1.35
HMGCS2P54868 KRT8P36-201ENST00000489121 1440 ntBASIC23.5■■□□□ 1.35
HMGCS2P54868 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
HMGCS2P54868 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
HMGCS2P54868 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC23.5■■□□□ 1.35
HMGCS2P54868 AC026471.5-201ENST00000615068 467 ntBASIC23.5■■□□□ 1.35
HMGCS2P54868 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
HMGCS2P54868 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
HMGCS2P54868 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC23.5■■□□□ 1.35
HMGCS2P54868 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC23.5■■□□□ 1.35
HMGCS2P54868 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC23.5■■□□□ 1.35
HMGCS2P54868 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
HMGCS2P54868 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
HMGCS2P54868 MYB-221ENST00000527615 2381 ntTSL 5 BASIC23.5■■□□□ 1.35
HMGCS2P54868 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC23.5■■□□□ 1.35
HMGCS2P54868 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC23.49■■□□□ 1.35
HMGCS2P54868 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
HMGCS2P54868 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC23.49■■□□□ 1.35
HMGCS2P54868 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
HMGCS2P54868 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC23.49■■□□□ 1.35
HMGCS2P54868 AF186192.3-201ENST00000583427 947 ntBASIC23.49■■□□□ 1.35
HMGCS2P54868 MIR2861-201ENST00000636310 90 ntBASIC23.49■■□□□ 1.35
HMGCS2P54868 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
HMGCS2P54868 HTR7P1-201ENST00000538670 1336 ntBASIC23.49■■□□□ 1.35
HMGCS2P54868 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
HMGCS2P54868 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC23.49■■□□□ 1.35
HMGCS2P54868 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC23.48■■□□□ 1.35
HMGCS2P54868 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
HMGCS2P54868 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC23.48■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms