Protein–RNA interactions for Protein: P48412

UPF3, Nonsense-mediated mRNA decay protein 3, yeastyeast

Known RBP Predictions only

Length 387 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UPF3P48412 CRG1YHR209W 876 nt2.08□□□□□ -2.08
UPF3P48412 YKL183C-AYKL183C-A 213 nt2.08□□□□□ -2.08
UPF3P48412 SIR4YDR227W 4077 nt2.08□□□□□ -2.08
UPF3P48412 UTP22YGR090W 3714 nt2.07□□□□□ -2.08
UPF3P48412 RGA1YOR127W 3024 nt2.07□□□□□ -2.08
UPF3P48412 ATG9YDL149W 2994 nt2.07□□□□□ -2.08
UPF3P48412 QCR7YDR529C 384 nt2.07□□□□□ -2.08
UPF3P48412 GCN4YEL009C 846 nt2.07□□□□□ -2.08
UPF3P48412 VTC1YER072W 390 nt2.07□□□□□ -2.08
UPF3P48412 YER087C-AYER087C-A 552 nt2.07□□□□□ -2.08
UPF3P48412 YLR406C-AYLR406C-A 150 nt2.07□□□□□ -2.08
UPF3P48412 RRT1YBL048W 312 nt2.07□□□□□ -2.08
UPF3P48412 FYV12YOR183W 390 nt2.07□□□□□ -2.08
UPF3P48412 YGR042WYGR042W 816 nt2.06□□□□□ -2.08
UPF3P48412 ATP7YKL016C 525 nt2.06□□□□□ -2.08
UPF3P48412 DGR1YNL130C-A 147 nt2.06□□□□□ -2.08
UPF3P48412 ERP4YOR016C 624 nt2.06□□□□□ -2.08
UPF3P48412 PRM3YPL192C 402 nt2.06□□□□□ -2.08
UPF3P48412 YBR121C-AYBR121C-A 159 nt2.06□□□□□ -2.08
UPF3P48412 ARP7YPR034W 1434 nt2.06□□□□□ -2.08
UPF3P48412 DAS1YJL149W 1992 nt2.05□□□□□ -2.08
UPF3P48412 BUD2YKL092C 3315 nt2.05□□□□□ -2.08
UPF3P48412 YER135CYER135C 393 nt2.05□□□□□ -2.08
UPF3P48412 RRF1YHR038W 693 nt2.05□□□□□ -2.08
UPF3P48412 YML009C-AYML009C-A 327 nt2.05□□□□□ -2.08
UPF3P48412 YPR099CYPR099C 357 nt2.05□□□□□ -2.08
UPF3P48412 GNT1YOR320C 1476 nt2.05□□□□□ -2.08
UPF3P48412 DIE2YGR227W 1578 nt2.05□□□□□ -2.08
UPF3P48412 SEY1YOR165W 2331 nt2.05□□□□□ -2.08
UPF3P48412 YDL118WYDL118W 381 nt2.04□□□□□ -2.08
UPF3P48412 BTT1YDR252W 450 nt2.04□□□□□ -2.08
UPF3P48412 YHR073W-AYHR073W-A 177 nt2.04□□□□□ -2.08
UPF3P48412 NFU1YKL040C 771 nt2.04□□□□□ -2.08
UPF3P48412 TOF2YKR010C 2316 nt2.04□□□□□ -2.08
UPF3P48412 TMA7YLR262C-A 195 nt2.04□□□□□ -2.08
UPF3P48412 SEC63YOR254C 1992 nt2.04□□□□□ -2.08
UPF3P48412 PLC1YPL268W 2610 nt2.04□□□□□ -2.08
UPF3P48412 PAU3YCR104W 375 nt2.03□□□□□ -2.08
UPF3P48412 YER023C-AYER023C-A 213 nt2.03□□□□□ -2.08
UPF3P48412 YLR287CYLR287C 1068 nt2.03□□□□□ -2.08
UPF3P48412 YBL108WYBL108W 306 nt2.03□□□□□ -2.08
UPF3P48412 FMP23YBR047W 528 nt2.03□□□□□ -2.08
UPF3P48412 YPL182CYPL182C 384 nt2.03□□□□□ -2.08
UPF3P48412 PAN3YKL025C 2040 nt2.03□□□□□ -2.08
UPF3P48412 ALK2YBL009W 2031 nt2.03□□□□□ -2.08
UPF3P48412 UFD4YKL010C 4452 nt2.03□□□□□ -2.09
UPF3P48412 YMR045CYMR045C 5268 nt2.03□□□□□ -2.09
UPF3P48412 YDL152WYDL152W 366 nt2.02□□□□□ -2.09
UPF3P48412 YDR114CYDR114C 303 nt2.02□□□□□ -2.09
UPF3P48412 RPL42BYHR141C 321 nt2.02□□□□□ -2.09
UPF3P48412 RPA34YJL148W 702 nt2.02□□□□□ -2.09
UPF3P48412 CGI121YML036W 546 nt2.02□□□□□ -2.09
UPF3P48412 RPL42AYNL162W 321 nt2.02□□□□□ -2.09
UPF3P48412 MKT1YNL085W 2493 nt2.01□□□□□ -2.09
UPF3P48412 MSH6YDR097C 3729 nt2.01□□□□□ -2.09
UPF3P48412 FRK1YPL141C 2598 nt2.01□□□□□ -2.09
UPF3P48412 YPL238CYPL238C 390 nt2.01□□□□□ -2.09
UPF3P48412 HSH155YMR288W 2916 nt2.01□□□□□ -2.09
UPF3P48412 FKS1YLR342W 5631 nt2.01□□□□□ -2.09
UPF3P48412 YOR343W-BYOR343W-B 5313 nt2□□□□□ -2.09
UPF3P48412 CTR9YOL145C 3234 nt2□□□□□ -2.09
UPF3P48412 YGL239CYGL239C 315 nt2□□□□□ -2.09
UPF3P48412 YBL071CYBL071C 309 nt2□□□□□ -2.09
UPF3P48412 YBL073WYBL073W 312 nt2□□□□□ -2.09
UPF3P48412 MSS18YPR134W 807 nt2□□□□□ -2.09
UPF3P48412 DCP2YNL118C 2913 nt2□□□□□ -2.09
UPF3P48412 CFT2YLR115W 2580 nt2□□□□□ -2.09
UPF3P48412 UBR2YLR024C 5619 nt1.99□□□□□ -2.09
UPF3P48412 MF(ALPHA)1YPL187W 498 nt1.99□□□□□ -2.09
UPF3P48412 YFR016CYFR016C 3702 nt1.99□□□□□ -2.09
UPF3P48412 GCN2YDR283C 4980 nt1.98□□□□□ -2.09
UPF3P48412 AGA2YGL032C 264 nt1.98□□□□□ -2.09
UPF3P48412 YHR071C-AYHR071C-A 321 nt1.98□□□□□ -2.09
UPF3P48412 RPS27AYKL156W 249 nt1.98□□□□□ -2.09
UPF3P48412 YBL012CYBL012C 402 nt1.98□□□□□ -2.09
UPF3P48412 NUP120YKL057C 3114 nt1.97□□□□□ -2.09
UPF3P48412 YGR250CYGR250C 2346 nt1.97□□□□□ -2.09
UPF3P48412 HMI1YOL095C 2121 nt1.97□□□□□ -2.09
UPF3P48412 YMR001C-AYMR001C-A 231 nt1.97□□□□□ -2.09
UPF3P48412 YHR214C-BYHR214C-B 5382 nt1.97□□□□□ -2.09
UPF3P48412 ATP6Q0085 780 nt1.96□□□□□ -2.1
UPF3P48412 SDH7YDR511W 402 nt1.96□□□□□ -2.1
UPF3P48412 YER088C-AYER088C-A 324 nt1.96□□□□□ -2.1
UPF3P48412 MAK10YEL053C 2202 nt1.96□□□□□ -2.1
UPF3P48412 NOP53YPL146C 1368 nt1.96□□□□□ -2.1
UPF3P48412 HMRA1YCR097W 381 nt1.95□□□□□ -2.1
UPF3P48412 CBS1YDL069C 690 nt1.95□□□□□ -2.1
UPF3P48412 YOR192C-CYOR192C-C 237 nt1.95□□□□□ -2.1
UPF3P48412 EMP24YGL200C 612 nt1.94□□□□□ -2.1
UPF3P48412 YLR154W-FYLR154W-F 141 nt1.94□□□□□ -2.1
UPF3P48412 YNL114CYNL114C 372 nt1.94□□□□□ -2.1
UPF3P48412 YOR392WYOR392W 444 nt1.94□□□□□ -2.1
UPF3P48412 SWI6YLR182W 2412 nt1.93□□□□□ -2.1
UPF3P48412 YJR039WYJR039W 3366 nt1.93□□□□□ -2.1
UPF3P48412 DFG16YOR030W 1860 nt1.93□□□□□ -2.1
UPF3P48412 VPS34YLR240W 2628 nt1.93□□□□□ -2.1
UPF3P48412 REV3YPL167C 4515 nt1.93□□□□□ -2.1
UPF3P48412 SWI5YDR146C 2130 nt1.93□□□□□ -2.1
UPF3P48412 PEX8YGR077C 1770 nt1.93□□□□□ -2.1
UPF3P48412 PUT3YKL015W 2940 nt1.92□□□□□ -2.1
Retrieved 100 of 7,029 protein–RNA pairs in 118.7 ms