Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 DHDH-203ENST00000522614 776 ntTSL 5 BASIC20.49■□□□□ 0.87
TNFRSF4P43489 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC20.49■□□□□ 0.87
TNFRSF4P43489 BX088651.1-201ENST00000540551 451 ntBASIC20.49■□□□□ 0.87
TNFRSF4P43489 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
TNFRSF4P43489 AC113410.3-201ENST00000623366 203 ntBASIC20.49■□□□□ 0.87
TNFRSF4P43489 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TNFRSF4P43489 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC20.49■□□□□ 0.87
TNFRSF4P43489 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TNFRSF4P43489 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
TNFRSF4P43489 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
TNFRSF4P43489 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TNFRSF4P43489 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TNFRSF4P43489 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TNFRSF4P43489 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TNFRSF4P43489 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
TNFRSF4P43489 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC20.48■□□□□ 0.87
TNFRSF4P43489 ECEL1P3-201ENST00000427961 737 ntBASIC20.48■□□□□ 0.87
TNFRSF4P43489 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TNFRSF4P43489 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC20.48■□□□□ 0.87
TNFRSF4P43489 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC20.48■□□□□ 0.87
TNFRSF4P43489 RPS20-210ENST00000523936 899 ntTSL 2 BASIC20.48■□□□□ 0.87
TNFRSF4P43489 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TNFRSF4P43489 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC20.48■□□□□ 0.87
TNFRSF4P43489 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC20.48■□□□□ 0.87
TNFRSF4P43489 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
TNFRSF4P43489 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TNFRSF4P43489 AL049796.1-201ENST00000565336 1766 ntBASIC20.48■□□□□ 0.87
TNFRSF4P43489 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TNFRSF4P43489 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
TNFRSF4P43489 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TNFRSF4P43489 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC20.48■□□□□ 0.87
TNFRSF4P43489 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
TNFRSF4P43489 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
TNFRSF4P43489 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
TNFRSF4P43489 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
TNFRSF4P43489 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
TNFRSF4P43489 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC20.47■□□□□ 0.87
TNFRSF4P43489 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
TNFRSF4P43489 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC20.47■□□□□ 0.87
TNFRSF4P43489 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC20.47■□□□□ 0.87
TNFRSF4P43489 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
TNFRSF4P43489 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC20.47■□□□□ 0.87
TNFRSF4P43489 MYB-221ENST00000527615 2381 ntTSL 5 BASIC20.47■□□□□ 0.87
TNFRSF4P43489 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
TNFRSF4P43489 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC20.47■□□□□ 0.87
TNFRSF4P43489 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
TNFRSF4P43489 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC20.47■□□□□ 0.87
TNFRSF4P43489 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.47■□□□□ 0.87
TNFRSF4P43489 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC20.47■□□□□ 0.87
TNFRSF4P43489 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
TNFRSF4P43489 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.46■□□□□ 0.87
TNFRSF4P43489 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC20.46■□□□□ 0.87
TNFRSF4P43489 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TNFRSF4P43489 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TNFRSF4P43489 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
TNFRSF4P43489 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC20.46■□□□□ 0.87
TNFRSF4P43489 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC20.46■□□□□ 0.87
TNFRSF4P43489 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
TNFRSF4P43489 KRT16P5-201ENST00000455284 522 ntBASIC20.46■□□□□ 0.87
TNFRSF4P43489 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC20.46■□□□□ 0.87
TNFRSF4P43489 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TNFRSF4P43489 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TNFRSF4P43489 LINC01023-201ENST00000606054 436 ntBASIC20.46■□□□□ 0.87
TNFRSF4P43489 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.46■□□□□ 0.87
TNFRSF4P43489 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
TNFRSF4P43489 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TNFRSF4P43489 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC20.45■□□□□ 0.86
TNFRSF4P43489 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TNFRSF4P43489 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
TNFRSF4P43489 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TNFRSF4P43489 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.45■□□□□ 0.86
TNFRSF4P43489 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.45■□□□□ 0.86
TNFRSF4P43489 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TNFRSF4P43489 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TNFRSF4P43489 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TNFRSF4P43489 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TNFRSF4P43489 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC20.45■□□□□ 0.86
TNFRSF4P43489 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC20.45■□□□□ 0.86
TNFRSF4P43489 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TNFRSF4P43489 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
TNFRSF4P43489 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC20.45■□□□□ 0.86
TNFRSF4P43489 Six3os1_6.1-201ENST00000620790 196 ntBASIC20.45■□□□□ 0.86
TNFRSF4P43489 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TNFRSF4P43489 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TNFRSF4P43489 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TNFRSF4P43489 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TNFRSF4P43489 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
TNFRSF4P43489 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC20.45■□□□□ 0.86
TNFRSF4P43489 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
TNFRSF4P43489 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
TNFRSF4P43489 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TNFRSF4P43489 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
TNFRSF4P43489 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TNFRSF4P43489 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TNFRSF4P43489 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TNFRSF4P43489 FBXW4P1-201ENST00000426721 2239 ntBASIC20.45■□□□□ 0.86
TNFRSF4P43489 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
TNFRSF4P43489 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.44■□□□□ 0.86
TNFRSF4P43489 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.44■□□□□ 0.86
TNFRSF4P43489 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 58.5 ms