Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
HMGA1P17096 SPIB-206ENST00000596074 847 ntTSL 2 BASIC21.16■□□□□ 0.98
HMGA1P17096 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HMGA1P17096 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
HMGA1P17096 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
HMGA1P17096 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HMGA1P17096 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HMGA1P17096 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HMGA1P17096 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
HMGA1P17096 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC21.15■□□□□ 0.98
HMGA1P17096 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HMGA1P17096 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HMGA1P17096 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HMGA1P17096 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
HMGA1P17096 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HMGA1P17096 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC21.15■□□□□ 0.98
HMGA1P17096 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
HMGA1P17096 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC21.15■□□□□ 0.98
HMGA1P17096 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HMGA1P17096 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HMGA1P17096 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC21.15■□□□□ 0.98
HMGA1P17096 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HMGA1P17096 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC21.15■□□□□ 0.98
HMGA1P17096 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
HMGA1P17096 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
HMGA1P17096 AL121603.2-201ENST00000557373 2117 ntBASIC21.14■□□□□ 0.98
HMGA1P17096 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
HMGA1P17096 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
HMGA1P17096 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC21.14■□□□□ 0.97
HMGA1P17096 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC21.14■□□□□ 0.97
HMGA1P17096 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
HMGA1P17096 LY6E-205ENST00000519611 635 ntTSL 3 BASIC21.14■□□□□ 0.97
HMGA1P17096 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
HMGA1P17096 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC21.14■□□□□ 0.97
HMGA1P17096 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC21.14■□□□□ 0.97
HMGA1P17096 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
HMGA1P17096 AC124016.1-201ENST00000609552 612 ntBASIC21.14■□□□□ 0.97
HMGA1P17096 AL023875.1-201ENST00000640777 796 ntBASIC21.14■□□□□ 0.97
HMGA1P17096 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HMGA1P17096 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HMGA1P17096 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HMGA1P17096 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC21.13■□□□□ 0.97
HMGA1P17096 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
HMGA1P17096 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC21.13■□□□□ 0.97
HMGA1P17096 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC21.13■□□□□ 0.97
HMGA1P17096 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
HMGA1P17096 AC133681.1-201ENST00000465482 601 ntBASIC21.13■□□□□ 0.97
HMGA1P17096 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC21.13■□□□□ 0.97
HMGA1P17096 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC21.13■□□□□ 0.97
HMGA1P17096 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC21.13■□□□□ 0.97
HMGA1P17096 Z99916.2-201ENST00000604037 246 ntBASIC21.13■□□□□ 0.97
HMGA1P17096 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC21.13■□□□□ 0.97
HMGA1P17096 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HMGA1P17096 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC21.13■□□□□ 0.97
HMGA1P17096 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
HMGA1P17096 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC21.13■□□□□ 0.97
HMGA1P17096 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
HMGA1P17096 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
HMGA1P17096 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HMGA1P17096 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HMGA1P17096 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
HMGA1P17096 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HMGA1P17096 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
HMGA1P17096 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HMGA1P17096 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
HMGA1P17096 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC21.12■□□□□ 0.97
HMGA1P17096 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC21.12■□□□□ 0.97
HMGA1P17096 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC21.12■□□□□ 0.97
HMGA1P17096 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC21.12■□□□□ 0.97
HMGA1P17096 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
HMGA1P17096 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC21.12■□□□□ 0.97
HMGA1P17096 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
HMGA1P17096 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
HMGA1P17096 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
HMGA1P17096 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HMGA1P17096 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC21.12■□□□□ 0.97
HMGA1P17096 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC21.12■□□□□ 0.97
HMGA1P17096 AC079834.2-201ENST00000609776 1949 ntBASIC21.12■□□□□ 0.97
HMGA1P17096 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
HMGA1P17096 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
HMGA1P17096 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
HMGA1P17096 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
HMGA1P17096 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
HMGA1P17096 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
HMGA1P17096 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC21.11■□□□□ 0.97
HMGA1P17096 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
HMGA1P17096 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC21.11■□□□□ 0.97
HMGA1P17096 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
HMGA1P17096 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
HMGA1P17096 PTBP1P-201ENST00000554374 1601 ntBASIC21.11■□□□□ 0.97
HMGA1P17096 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HMGA1P17096 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC21.1■□□□□ 0.97
HMGA1P17096 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
HMGA1P17096 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC21.1■□□□□ 0.97
HMGA1P17096 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HMGA1P17096 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HMGA1P17096 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HMGA1P17096 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC21.1■□□□□ 0.97
HMGA1P17096 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC21.1■□□□□ 0.97
HMGA1P17096 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms