Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC12.78□□□□□ -0.36
APOBP04114 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
APOBP04114 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
APOBP04114 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC12.78□□□□□ -0.36
APOBP04114 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
APOBP04114 ABBA01031674.1-201ENST00000635145 728 ntBASIC12.78□□□□□ -0.36
APOBP04114 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
APOBP04114 EXOC3-AS1-202ENST00000623673 1663 ntBASIC12.78□□□□□ -0.36
APOBP04114 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
APOBP04114 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
APOBP04114 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC12.78□□□□□ -0.36
APOBP04114 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC12.78□□□□□ -0.36
APOBP04114 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
APOBP04114 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
APOBP04114 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
APOBP04114 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
APOBP04114 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
APOBP04114 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC12.78□□□□□ -0.36
APOBP04114 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC12.78□□□□□ -0.36
APOBP04114 AL356652.1-201ENST00000615962 565 ntBASIC12.78□□□□□ -0.36
APOBP04114 KRT8P36-201ENST00000489121 1440 ntBASIC12.77□□□□□ -0.36
APOBP04114 STX5-203ENST00000394690 1568 ntTSL 5 BASIC12.77□□□□□ -0.36
APOBP04114 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
APOBP04114 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
APOBP04114 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
APOBP04114 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC12.77□□□□□ -0.37
APOBP04114 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC12.77□□□□□ -0.37
APOBP04114 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
APOBP04114 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
APOBP04114 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
APOBP04114 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
APOBP04114 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC12.77□□□□□ -0.37
APOBP04114 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
APOBP04114 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
APOBP04114 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC12.77□□□□□ -0.37
APOBP04114 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC12.77□□□□□ -0.37
APOBP04114 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
APOBP04114 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
APOBP04114 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
APOBP04114 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
APOBP04114 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC12.77□□□□□ -0.37
APOBP04114 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
APOBP04114 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
APOBP04114 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
APOBP04114 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
APOBP04114 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC12.76□□□□□ -0.37
APOBP04114 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
APOBP04114 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC12.76□□□□□ -0.37
APOBP04114 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC12.76□□□□□ -0.37
APOBP04114 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC12.76□□□□□ -0.37
APOBP04114 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
APOBP04114 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
APOBP04114 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
APOBP04114 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC12.76□□□□□ -0.37
APOBP04114 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC12.76□□□□□ -0.37
APOBP04114 PPP1R14BP5-201ENST00000440334 435 ntBASIC12.76□□□□□ -0.37
APOBP04114 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
APOBP04114 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC12.76□□□□□ -0.37
APOBP04114 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
APOBP04114 AP005242.2-201ENST00000580065 1175 ntBASIC12.76□□□□□ -0.37
APOBP04114 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC12.76□□□□□ -0.37
APOBP04114 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC12.76□□□□□ -0.37
APOBP04114 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
APOBP04114 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC12.76□□□□□ -0.37
APOBP04114 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC12.76□□□□□ -0.37
APOBP04114 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC12.76□□□□□ -0.37
APOBP04114 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC12.76□□□□□ -0.37
APOBP04114 AC139887.4-201ENST00000607877 719 ntBASIC12.76□□□□□ -0.37
APOBP04114 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
APOBP04114 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
APOBP04114 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
APOBP04114 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
APOBP04114 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC12.76□□□□□ -0.37
APOBP04114 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
APOBP04114 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
APOBP04114 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
APOBP04114 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC12.76□□□□□ -0.37
APOBP04114 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
APOBP04114 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC12.76□□□□□ -0.37
APOBP04114 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC12.76□□□□□ -0.37
APOBP04114 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC12.76□□□□□ -0.37
APOBP04114 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC12.75□□□□□ -0.37
APOBP04114 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
APOBP04114 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC12.75□□□□□ -0.37
APOBP04114 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
APOBP04114 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
APOBP04114 AC010203.1-204ENST00000548782 407 ntBASIC12.75□□□□□ -0.37
APOBP04114 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC12.75□□□□□ -0.37
APOBP04114 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
APOBP04114 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
APOBP04114 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
APOBP04114 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
APOBP04114 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
APOBP04114 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
APOBP04114 NIFKP9-201ENST00000419265 221 ntBASIC12.75□□□□□ -0.37
APOBP04114 AC022616.7-201ENST00000525383 220 ntBASIC12.75□□□□□ -0.37
APOBP04114 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC12.75□□□□□ -0.37
APOBP04114 STK25-205ENST00000405883 1904 ntTSL 2 BASIC12.75□□□□□ -0.37
APOBP04114 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
APOBP04114 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms