Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
APOEP02649 PLK5-205ENST00000642079 1969 ntBASIC21.21■□□□□ 0.99
APOEP02649 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC21.21■□□□□ 0.99
APOEP02649 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
APOEP02649 ERF-202ENST00000440177 2032 ntTSL 2 BASIC21.21■□□□□ 0.99
APOEP02649 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC21.21■□□□□ 0.99
APOEP02649 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC21.21■□□□□ 0.99
APOEP02649 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC21.21■□□□□ 0.99
APOEP02649 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
APOEP02649 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
APOEP02649 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
APOEP02649 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC21.21■□□□□ 0.99
APOEP02649 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
APOEP02649 PPP1R14BP2-201ENST00000426284 444 ntBASIC21.21■□□□□ 0.99
APOEP02649 AC073210.2-201ENST00000430369 194 ntBASIC21.21■□□□□ 0.99
APOEP02649 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC21.21■□□□□ 0.99
APOEP02649 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC21.21■□□□□ 0.99
APOEP02649 RGMA-211ENST00000557420 989 ntTSL 3 BASIC21.21■□□□□ 0.99
APOEP02649 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
APOEP02649 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
APOEP02649 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
APOEP02649 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
APOEP02649 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
APOEP02649 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC21.2■□□□□ 0.98
APOEP02649 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC21.2■□□□□ 0.98
APOEP02649 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
APOEP02649 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC21.2■□□□□ 0.98
APOEP02649 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
APOEP02649 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
APOEP02649 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
APOEP02649 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC21.2■□□□□ 0.98
APOEP02649 APTR-205ENST00000447009 902 ntTSL 2 BASIC21.2■□□□□ 0.98
APOEP02649 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC21.2■□□□□ 0.98
APOEP02649 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC21.2■□□□□ 0.98
APOEP02649 AC105020.6-201ENST00000621523 1217 ntBASIC21.2■□□□□ 0.98
APOEP02649 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC21.2■□□□□ 0.98
APOEP02649 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC21.2■□□□□ 0.98
APOEP02649 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
APOEP02649 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
APOEP02649 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
APOEP02649 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
APOEP02649 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC21.19■□□□□ 0.98
APOEP02649 FEM1AP1-201ENST00000431297 1995 ntBASIC21.19■□□□□ 0.98
APOEP02649 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
APOEP02649 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC21.19■□□□□ 0.98
APOEP02649 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
APOEP02649 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
APOEP02649 LINC01006-201ENST00000333319 2292 ntBASIC21.19■□□□□ 0.98
APOEP02649 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
APOEP02649 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC21.19■□□□□ 0.98
APOEP02649 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
APOEP02649 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC21.19■□□□□ 0.98
APOEP02649 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
APOEP02649 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC21.19■□□□□ 0.98
APOEP02649 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC21.19■□□□□ 0.98
APOEP02649 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC21.19■□□□□ 0.98
APOEP02649 AC098934.4-201ENST00000564127 592 ntBASIC21.19■□□□□ 0.98
APOEP02649 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
APOEP02649 AL356652.1-201ENST00000615962 565 ntBASIC21.19■□□□□ 0.98
APOEP02649 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC21.19■□□□□ 0.98
APOEP02649 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
APOEP02649 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
APOEP02649 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
APOEP02649 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
APOEP02649 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
APOEP02649 AC006128.1-201ENST00000624704 1661 ntBASIC21.18■□□□□ 0.98
APOEP02649 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC21.18■□□□□ 0.98
APOEP02649 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
APOEP02649 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC21.18■□□□□ 0.98
APOEP02649 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC21.18■□□□□ 0.98
APOEP02649 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
APOEP02649 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
APOEP02649 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
APOEP02649 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC21.18■□□□□ 0.98
APOEP02649 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC21.18■□□□□ 0.98
APOEP02649 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC21.18■□□□□ 0.98
APOEP02649 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
APOEP02649 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC21.18■□□□□ 0.98
APOEP02649 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
APOEP02649 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
APOEP02649 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC21.18■□□□□ 0.98
APOEP02649 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC21.18■□□□□ 0.98
APOEP02649 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
APOEP02649 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC21.18■□□□□ 0.98
APOEP02649 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
APOEP02649 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
APOEP02649 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
APOEP02649 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
APOEP02649 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
APOEP02649 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
APOEP02649 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
APOEP02649 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
APOEP02649 DUSP5P2-201ENST00000426873 1033 ntBASIC21.17■□□□□ 0.98
APOEP02649 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC21.17■□□□□ 0.98
APOEP02649 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC21.17■□□□□ 0.98
APOEP02649 HES2-205ENST00000487437 968 ntTSL 3 BASIC21.17■□□□□ 0.98
APOEP02649 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC21.17■□□□□ 0.98
APOEP02649 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC21.17■□□□□ 0.98
APOEP02649 MIR2861-201ENST00000636310 90 ntBASIC21.17■□□□□ 0.98
APOEP02649 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms