Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.76■■□□□ 1.07
RNF40O75150 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
RNF40O75150 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
RNF40O75150 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC21.76■■□□□ 1.07
RNF40O75150 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC21.76■■□□□ 1.07
RNF40O75150 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC21.76■■□□□ 1.07
RNF40O75150 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
RNF40O75150 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC21.76■■□□□ 1.07
RNF40O75150 AC098934.4-201ENST00000564127 592 ntBASIC21.76■■□□□ 1.07
RNF40O75150 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
RNF40O75150 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
RNF40O75150 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
RNF40O75150 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC21.76■■□□□ 1.07
RNF40O75150 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
RNF40O75150 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNF40O75150 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
RNF40O75150 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
RNF40O75150 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
RNF40O75150 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNF40O75150 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
RNF40O75150 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
RNF40O75150 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC21.75■■□□□ 1.07
RNF40O75150 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNF40O75150 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNF40O75150 OR7E47P-201ENST00000546390 1422 ntBASIC21.75■■□□□ 1.07
RNF40O75150 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNF40O75150 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
RNF40O75150 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC21.75■■□□□ 1.07
RNF40O75150 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC21.75■■□□□ 1.07
RNF40O75150 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
RNF40O75150 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC21.75■■□□□ 1.07
RNF40O75150 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNF40O75150 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC21.75■■□□□ 1.07
RNF40O75150 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
RNF40O75150 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC21.75■■□□□ 1.07
RNF40O75150 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNF40O75150 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNF40O75150 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
RNF40O75150 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC21.74■■□□□ 1.07
RNF40O75150 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
RNF40O75150 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC21.74■■□□□ 1.07
RNF40O75150 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RNF40O75150 BMP1-204ENST00000397814 836 ntTSL 4 BASIC21.74■■□□□ 1.07
RNF40O75150 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
RNF40O75150 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC21.74■■□□□ 1.07
RNF40O75150 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC21.74■■□□□ 1.07
RNF40O75150 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
RNF40O75150 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RNF40O75150 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RNF40O75150 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC21.74■■□□□ 1.07
RNF40O75150 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RNF40O75150 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
RNF40O75150 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
RNF40O75150 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
RNF40O75150 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
RNF40O75150 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RNF40O75150 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
RNF40O75150 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
RNF40O75150 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC21.74■■□□□ 1.07
RNF40O75150 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
RNF40O75150 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RNF40O75150 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC21.73■■□□□ 1.07
RNF40O75150 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC21.73■■□□□ 1.07
RNF40O75150 BID-204ENST00000399767 2129 ntTSL 2 BASIC21.73■■□□□ 1.07
RNF40O75150 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RNF40O75150 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
RNF40O75150 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RNF40O75150 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RNF40O75150 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
RNF40O75150 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
RNF40O75150 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC21.73■■□□□ 1.07
RNF40O75150 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC21.73■■□□□ 1.07
RNF40O75150 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC21.73■■□□□ 1.07
RNF40O75150 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RNF40O75150 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RNF40O75150 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
RNF40O75150 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
RNF40O75150 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC21.73■■□□□ 1.07
RNF40O75150 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
RNF40O75150 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC21.72■■□□□ 1.07
RNF40O75150 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC21.72■■□□□ 1.07
RNF40O75150 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RNF40O75150 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC21.72■■□□□ 1.07
RNF40O75150 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC21.72■■□□□ 1.07
RNF40O75150 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
RNF40O75150 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
RNF40O75150 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
RNF40O75150 AC073210.2-201ENST00000430369 194 ntBASIC21.72■■□□□ 1.07
RNF40O75150 UQCRFS1P1-201ENST00000435169 820 ntBASIC21.72■■□□□ 1.07
RNF40O75150 FAM201B-201ENST00000458407 597 ntBASIC21.72■■□□□ 1.07
RNF40O75150 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC21.72■■□□□ 1.07
RNF40O75150 AC013268.1-206ENST00000638368 961 ntBASIC21.72■■□□□ 1.07
RNF40O75150 AC112229.1-201ENST00000639295 961 ntBASIC21.72■■□□□ 1.07
RNF40O75150 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC21.72■■□□□ 1.07
RNF40O75150 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RNF40O75150 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RNF40O75150 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
RNF40O75150 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
RNF40O75150 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RNF40O75150 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms