Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 OR2I1P-207ENST00000453522 948 ntBASIC20.33■□□□□ 0.85
SHOX2O60902 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SHOX2O60902 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SHOX2O60902 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
SHOX2O60902 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC20.33■□□□□ 0.84
SHOX2O60902 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
SHOX2O60902 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC20.33■□□□□ 0.84
SHOX2O60902 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC20.33■□□□□ 0.84
SHOX2O60902 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SHOX2O60902 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SHOX2O60902 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHOX2O60902 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHOX2O60902 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC20.32■□□□□ 0.84
SHOX2O60902 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC20.32■□□□□ 0.84
SHOX2O60902 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SHOX2O60902 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SHOX2O60902 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHOX2O60902 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
SHOX2O60902 PRTG-204ENST00000561292 833 ntTSL 3 BASIC20.32■□□□□ 0.84
SHOX2O60902 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC20.32■□□□□ 0.84
SHOX2O60902 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHOX2O60902 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHOX2O60902 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC20.32■□□□□ 0.84
SHOX2O60902 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHOX2O60902 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHOX2O60902 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
SHOX2O60902 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC20.32■□□□□ 0.84
SHOX2O60902 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SHOX2O60902 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC20.32■□□□□ 0.84
SHOX2O60902 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
SHOX2O60902 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SHOX2O60902 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
SHOX2O60902 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SHOX2O60902 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SHOX2O60902 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC20.31■□□□□ 0.84
SHOX2O60902 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC20.31■□□□□ 0.84
SHOX2O60902 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SHOX2O60902 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SHOX2O60902 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC20.31■□□□□ 0.84
SHOX2O60902 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC20.31■□□□□ 0.84
SHOX2O60902 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SHOX2O60902 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SHOX2O60902 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SHOX2O60902 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SHOX2O60902 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SHOX2O60902 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
SHOX2O60902 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
SHOX2O60902 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SHOX2O60902 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC20.3■□□□□ 0.84
SHOX2O60902 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SHOX2O60902 AC104581.1-202ENST00000635932 2618 ntBASIC20.3■□□□□ 0.84
SHOX2O60902 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SHOX2O60902 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SHOX2O60902 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
SHOX2O60902 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC20.3■□□□□ 0.84
SHOX2O60902 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
SHOX2O60902 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC20.3■□□□□ 0.84
SHOX2O60902 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
SHOX2O60902 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC20.3■□□□□ 0.84
SHOX2O60902 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC20.3■□□□□ 0.84
SHOX2O60902 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC20.3■□□□□ 0.84
SHOX2O60902 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC20.3■□□□□ 0.84
SHOX2O60902 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC20.3■□□□□ 0.84
SHOX2O60902 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SHOX2O60902 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
SHOX2O60902 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SHOX2O60902 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SHOX2O60902 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC20.3■□□□□ 0.84
SHOX2O60902 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
SHOX2O60902 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
SHOX2O60902 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC20.29■□□□□ 0.84
SHOX2O60902 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHOX2O60902 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHOX2O60902 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SHOX2O60902 AL133373.2-201ENST00000623187 2828 ntBASIC20.29■□□□□ 0.84
SHOX2O60902 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC20.29■□□□□ 0.84
SHOX2O60902 RNF146-205ENST00000477776 762 ntTSL 3 BASIC20.29■□□□□ 0.84
SHOX2O60902 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC20.29■□□□□ 0.84
SHOX2O60902 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHOX2O60902 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC20.29■□□□□ 0.84
SHOX2O60902 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHOX2O60902 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.28■□□□□ 0.84
SHOX2O60902 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHOX2O60902 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHOX2O60902 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC20.28■□□□□ 0.84
SHOX2O60902 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHOX2O60902 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.28■□□□□ 0.84
SHOX2O60902 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SHOX2O60902 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC20.28■□□□□ 0.84
SHOX2O60902 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC20.28■□□□□ 0.84
SHOX2O60902 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC20.28■□□□□ 0.84
SHOX2O60902 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
SHOX2O60902 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHOX2O60902 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHOX2O60902 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHOX2O60902 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SHOX2O60902 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC20.28■□□□□ 0.84
SHOX2O60902 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC20.28■□□□□ 0.84
SHOX2O60902 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC20.28■□□□□ 0.84
SHOX2O60902 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms