Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 GRAMD4P8-201ENST00000605465 1115 ntBASIC35.05■■■■□ 3.2
CUX2O14529 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC35.05■■■■□ 3.2
CUX2O14529 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC35.05■■■■□ 3.2
CUX2O14529 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC35.05■■■■□ 3.2
CUX2O14529 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC35.05■■■■□ 3.2
CUX2O14529 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC35.05■■■■□ 3.2
CUX2O14529 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC35.05■■■■□ 3.2
CUX2O14529 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC35.04■■■■□ 3.2
CUX2O14529 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC35.04■■■■□ 3.2
CUX2O14529 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC35.04■■■■□ 3.2
CUX2O14529 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC35.04■■■■□ 3.2
CUX2O14529 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC35.04■■■■□ 3.2
CUX2O14529 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC35.04■■■■□ 3.2
CUX2O14529 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC35.04■■■■□ 3.2
CUX2O14529 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC35.04■■■■□ 3.2
CUX2O14529 YBX1P2-201ENST00000489612 999 ntBASIC35.03■■■■□ 3.2
CUX2O14529 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC35.03■■■■□ 3.2
CUX2O14529 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC35.03■■■■□ 3.2
CUX2O14529 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC35.03■■■■□ 3.2
CUX2O14529 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC35.03■■■■□ 3.2
CUX2O14529 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC35.03■■■■□ 3.2
CUX2O14529 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC35.03■■■■□ 3.2
CUX2O14529 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC35.03■■■■□ 3.2
CUX2O14529 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC35.02■■■■□ 3.2
CUX2O14529 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC35.02■■■■□ 3.2
CUX2O14529 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC35.02■■■■□ 3.2
CUX2O14529 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC35.02■■■■□ 3.2
CUX2O14529 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC35.02■■■■□ 3.2
CUX2O14529 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC35.02■■■■□ 3.2
CUX2O14529 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC35.02■■■■□ 3.2
CUX2O14529 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC35.02■■■■□ 3.2
CUX2O14529 KRT8P10-201ENST00000450021 1447 ntBASIC35.01■■■■□ 3.2
CUX2O14529 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC35.01■■■■□ 3.2
CUX2O14529 NIFKP9-201ENST00000419265 221 ntBASIC35.01■■■■□ 3.19
CUX2O14529 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC35.01■■■■□ 3.19
CUX2O14529 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC35.01■■■■□ 3.19
CUX2O14529 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC35.01■■■■□ 3.19
CUX2O14529 AC139887.4-201ENST00000607877 719 ntBASIC35.01■■■■□ 3.19
CUX2O14529 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC35■■■■□ 3.19
CUX2O14529 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC35■■■■□ 3.19
CUX2O14529 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC35■■■■□ 3.19
CUX2O14529 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC35■■■■□ 3.19
CUX2O14529 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC35■■■■□ 3.19
CUX2O14529 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC35■■■■□ 3.19
CUX2O14529 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC35■■■■□ 3.19
CUX2O14529 KRT17P6-201ENST00000453795 1220 ntBASIC35■■■■□ 3.19
CUX2O14529 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC35■■■■□ 3.19
CUX2O14529 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC35■■■■□ 3.19
CUX2O14529 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC35■■■■□ 3.19
CUX2O14529 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC35■■■■□ 3.19
CUX2O14529 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC35■■■■□ 3.19
CUX2O14529 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC35■■■■□ 3.19
CUX2O14529 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC35■■■■□ 3.19
CUX2O14529 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC34.99■■■■□ 3.19
CUX2O14529 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC34.99■■■■□ 3.19
CUX2O14529 AC005332.1-201ENST00000577698 1310 ntBASIC34.99■■■■□ 3.19
CUX2O14529 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC34.99■■■■□ 3.19
CUX2O14529 KSR1P1-201ENST00000446298 240 ntBASIC34.99■■■■□ 3.19
CUX2O14529 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC34.99■■■■□ 3.19
CUX2O14529 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC34.99■■■■□ 3.19
CUX2O14529 KRT16P1-201ENST00000399124 1418 ntBASIC34.99■■■■□ 3.19
CUX2O14529 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC34.99■■■■□ 3.19
CUX2O14529 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC34.99■■■■□ 3.19
CUX2O14529 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC34.98■■■■□ 3.19
CUX2O14529 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC34.98■■■■□ 3.19
CUX2O14529 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC34.98■■■■□ 3.19
CUX2O14529 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC34.98■■■■□ 3.19
CUX2O14529 TSPY21P-201ENST00000433481 731 ntBASIC34.98■■■■□ 3.19
CUX2O14529 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC34.98■■■■□ 3.19
CUX2O14529 TSPY23P-201ENST00000440136 739 ntBASIC34.98■■■■□ 3.19
CUX2O14529 AC092647.4-201ENST00000457211 535 ntBASIC34.98■■■■□ 3.19
CUX2O14529 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC34.98■■■■□ 3.19
CUX2O14529 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC34.98■■■■□ 3.19
CUX2O14529 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC34.98■■■■□ 3.19
CUX2O14529 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC34.97■■■■□ 3.19
CUX2O14529 PRR31-201ENST00000371629 978 ntTSL 2 BASIC34.97■■■■□ 3.19
CUX2O14529 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC34.97■■■■□ 3.19
CUX2O14529 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC34.97■■■■□ 3.19
CUX2O14529 AL138966.2-201ENST00000621997 464 ntBASIC34.97■■■■□ 3.19
CUX2O14529 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC34.97■■■■□ 3.19
CUX2O14529 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC34.97■■■■□ 3.19
CUX2O14529 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC34.97■■■■□ 3.19
CUX2O14529 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC34.97■■■■□ 3.19
CUX2O14529 F2R-202ENST00000505600 442 ntTSL 2 BASIC34.97■■■■□ 3.19
CUX2O14529 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC34.97■■■■□ 3.19
CUX2O14529 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC34.96■■■■□ 3.19
CUX2O14529 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC34.96■■■■□ 3.19
CUX2O14529 TSPY5P-201ENST00000426936 936 ntBASIC34.96■■■■□ 3.19
CUX2O14529 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC34.96■■■■□ 3.19
CUX2O14529 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC34.96■■■■□ 3.19
CUX2O14529 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC34.95■■■■□ 3.19
CUX2O14529 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC34.95■■■■□ 3.19
CUX2O14529 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC34.95■■■■□ 3.19
CUX2O14529 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC34.95■■■■□ 3.19
CUX2O14529 TREX2-204ENST00000370212 861 ntTSL 5 BASIC34.95■■■■□ 3.19
CUX2O14529 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC34.95■■■■□ 3.19
CUX2O14529 CD81-212ENST00000526072 1172 ntTSL 5 BASIC34.95■■■■□ 3.19
CUX2O14529 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC34.95■■■■□ 3.19
CUX2O14529 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC34.95■■■■□ 3.19
CUX2O14529 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC34.95■■■■□ 3.18
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms