Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRIM38O00635 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
TRIM38O00635 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.34■□□□□ 0.85
TRIM38O00635 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRIM38O00635 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
TRIM38O00635 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRIM38O00635 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRIM38O00635 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
TRIM38O00635 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRIM38O00635 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC20.34■□□□□ 0.85
TRIM38O00635 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
TRIM38O00635 CASP6-205ENST00000505486 538 ntTSL 4 BASIC20.34■□□□□ 0.85
TRIM38O00635 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC20.34■□□□□ 0.85
TRIM38O00635 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC20.34■□□□□ 0.85
TRIM38O00635 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC20.34■□□□□ 0.85
TRIM38O00635 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
TRIM38O00635 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRIM38O00635 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC20.34■□□□□ 0.85
TRIM38O00635 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
TRIM38O00635 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
TRIM38O00635 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
TRIM38O00635 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
TRIM38O00635 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
TRIM38O00635 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
TRIM38O00635 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
TRIM38O00635 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
TRIM38O00635 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.33■□□□□ 0.85
TRIM38O00635 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC20.33■□□□□ 0.85
TRIM38O00635 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC20.33■□□□□ 0.85
TRIM38O00635 GATS-209ENST00000454084 1030 ntTSL 3 BASIC20.33■□□□□ 0.85
TRIM38O00635 AC026366.1-201ENST00000488803 879 ntBASIC20.33■□□□□ 0.85
TRIM38O00635 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC20.33■□□□□ 0.85
TRIM38O00635 AC142381.4-202ENST00000563973 229 ntBASIC20.33■□□□□ 0.85
TRIM38O00635 FAM21FP-204ENST00000608637 956 ntBASIC20.33■□□□□ 0.85
TRIM38O00635 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC20.33■□□□□ 0.84
TRIM38O00635 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
TRIM38O00635 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.84
TRIM38O00635 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
TRIM38O00635 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.33■□□□□ 0.84
TRIM38O00635 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
TRIM38O00635 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRIM38O00635 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRIM38O00635 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.32■□□□□ 0.84
TRIM38O00635 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
TRIM38O00635 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
TRIM38O00635 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC20.32■□□□□ 0.84
TRIM38O00635 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC20.32■□□□□ 0.84
TRIM38O00635 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC20.32■□□□□ 0.84
TRIM38O00635 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRIM38O00635 MMD2-204ENST00000612910 778 ntTSL 5 BASIC20.32■□□□□ 0.84
TRIM38O00635 AP006294.2-201ENST00000641667 209 ntBASIC20.32■□□□□ 0.84
TRIM38O00635 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
TRIM38O00635 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC20.32■□□□□ 0.84
TRIM38O00635 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRIM38O00635 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.32■□□□□ 0.84
TRIM38O00635 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRIM38O00635 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRIM38O00635 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC20.31■□□□□ 0.84
TRIM38O00635 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
TRIM38O00635 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRIM38O00635 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRIM38O00635 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
TRIM38O00635 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
TRIM38O00635 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRIM38O00635 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRIM38O00635 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRIM38O00635 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC20.31■□□□□ 0.84
TRIM38O00635 AC245052.3-201ENST00000450182 901 ntBASIC20.31■□□□□ 0.84
TRIM38O00635 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
TRIM38O00635 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
TRIM38O00635 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.31■□□□□ 0.84
TRIM38O00635 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC20.31■□□□□ 0.84
TRIM38O00635 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRIM38O00635 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
TRIM38O00635 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.31■□□□□ 0.84
TRIM38O00635 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRIM38O00635 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
TRIM38O00635 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
TRIM38O00635 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
TRIM38O00635 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC20.3■□□□□ 0.84
TRIM38O00635 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC20.3■□□□□ 0.84
TRIM38O00635 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
TRIM38O00635 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
TRIM38O00635 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TRIM38O00635 AP003097.1-201ENST00000530657 1135 ntBASIC20.3■□□□□ 0.84
TRIM38O00635 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC20.3■□□□□ 0.84
TRIM38O00635 CYP2T3P-201ENST00000601990 817 ntBASIC20.3■□□□□ 0.84
TRIM38O00635 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC20.3■□□□□ 0.84
TRIM38O00635 AC073648.6-201ENST00000641589 218 ntBASIC20.3■□□□□ 0.84
TRIM38O00635 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC20.3■□□□□ 0.84
TRIM38O00635 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
TRIM38O00635 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.3■□□□□ 0.84
TRIM38O00635 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TRIM38O00635 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC20.3■□□□□ 0.84
TRIM38O00635 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TRIM38O00635 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TRIM38O00635 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
TRIM38O00635 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRIM38O00635 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRIM38O00635 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms