Protein–RNA interactions for Protein: O00203

AP3B1, AP-3 complex subunit beta-1, humanhuman

Predictions only

Length 1,094 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP3B1O00203 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
AP3B1O00203 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
AP3B1O00203 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC20.48■□□□□ 0.87
AP3B1O00203 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC20.48■□□□□ 0.87
AP3B1O00203 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
AP3B1O00203 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
AP3B1O00203 KRT18P5-201ENST00000436075 1291 ntBASIC20.48■□□□□ 0.87
AP3B1O00203 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
AP3B1O00203 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC20.48■□□□□ 0.87
AP3B1O00203 WWOX-218ENST00000627394 894 ntTSL 5 BASIC20.48■□□□□ 0.87
AP3B1O00203 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
AP3B1O00203 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
AP3B1O00203 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
AP3B1O00203 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
AP3B1O00203 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
AP3B1O00203 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
AP3B1O00203 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
AP3B1O00203 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
AP3B1O00203 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
AP3B1O00203 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
AP3B1O00203 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
AP3B1O00203 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC20.47■□□□□ 0.87
AP3B1O00203 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC20.47■□□□□ 0.87
AP3B1O00203 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC20.47■□□□□ 0.87
AP3B1O00203 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
AP3B1O00203 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC20.47■□□□□ 0.87
AP3B1O00203 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
AP3B1O00203 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
AP3B1O00203 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
AP3B1O00203 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC20.47■□□□□ 0.87
AP3B1O00203 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
AP3B1O00203 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
AP3B1O00203 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.47■□□□□ 0.87
AP3B1O00203 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
AP3B1O00203 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
AP3B1O00203 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
AP3B1O00203 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
AP3B1O00203 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
AP3B1O00203 CYP21A1P-202ENST00000354927 1481 ntBASIC20.46■□□□□ 0.87
AP3B1O00203 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
AP3B1O00203 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC20.46■□□□□ 0.87
AP3B1O00203 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC20.46■□□□□ 0.87
AP3B1O00203 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
AP3B1O00203 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
AP3B1O00203 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
AP3B1O00203 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC20.46■□□□□ 0.87
AP3B1O00203 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
AP3B1O00203 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
AP3B1O00203 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
AP3B1O00203 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC20.45■□□□□ 0.86
AP3B1O00203 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
AP3B1O00203 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
AP3B1O00203 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
AP3B1O00203 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
AP3B1O00203 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC20.45■□□□□ 0.86
AP3B1O00203 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
AP3B1O00203 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
AP3B1O00203 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
AP3B1O00203 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC20.45■□□□□ 0.86
AP3B1O00203 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC20.45■□□□□ 0.86
AP3B1O00203 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
AP3B1O00203 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
AP3B1O00203 DPP3P2-201ENST00000416030 1696 ntBASIC20.45■□□□□ 0.86
AP3B1O00203 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC20.45■□□□□ 0.86
AP3B1O00203 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC20.44■□□□□ 0.86
AP3B1O00203 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC20.44■□□□□ 0.86
AP3B1O00203 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC20.44■□□□□ 0.86
AP3B1O00203 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
AP3B1O00203 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
AP3B1O00203 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC20.44■□□□□ 0.86
AP3B1O00203 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC20.44■□□□□ 0.86
AP3B1O00203 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC20.44■□□□□ 0.86
AP3B1O00203 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
AP3B1O00203 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
AP3B1O00203 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
AP3B1O00203 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
AP3B1O00203 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
AP3B1O00203 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC20.44■□□□□ 0.86
AP3B1O00203 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
AP3B1O00203 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
AP3B1O00203 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
AP3B1O00203 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
AP3B1O00203 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
AP3B1O00203 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC20.43■□□□□ 0.86
AP3B1O00203 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC20.43■□□□□ 0.86
AP3B1O00203 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
AP3B1O00203 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC20.43■□□□□ 0.86
AP3B1O00203 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC20.43■□□□□ 0.86
AP3B1O00203 UQCRFS1P1-201ENST00000435169 820 ntBASIC20.43■□□□□ 0.86
AP3B1O00203 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC20.43■□□□□ 0.86
AP3B1O00203 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC20.43■□□□□ 0.86
AP3B1O00203 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
AP3B1O00203 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
AP3B1O00203 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC20.43■□□□□ 0.86
AP3B1O00203 MFSD11-216ENST00000590393 1141 ntBASIC20.43■□□□□ 0.86
AP3B1O00203 SMG8-203ENST00000578922 2178 ntBASIC20.43■□□□□ 0.86
AP3B1O00203 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
AP3B1O00203 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
AP3B1O00203 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
AP3B1O00203 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms