Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
CPSF4LA6NMK7 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CPSF4LA6NMK7 AC019069.1-201ENST00000610008 1333 ntBASIC18.68■□□□□ 0.58
CPSF4LA6NMK7 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
CPSF4LA6NMK7 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CPSF4LA6NMK7 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CPSF4LA6NMK7 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC18.67■□□□□ 0.58
CPSF4LA6NMK7 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CPSF4LA6NMK7 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CPSF4LA6NMK7 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CPSF4LA6NMK7 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
CPSF4LA6NMK7 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC18.67■□□□□ 0.58
CPSF4LA6NMK7 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC18.67■□□□□ 0.58
CPSF4LA6NMK7 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC18.67■□□□□ 0.58
CPSF4LA6NMK7 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC18.67■□□□□ 0.58
CPSF4LA6NMK7 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CPSF4LA6NMK7 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CPSF4LA6NMK7 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC18.67■□□□□ 0.58
CPSF4LA6NMK7 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CPSF4LA6NMK7 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CPSF4LA6NMK7 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CPSF4LA6NMK7 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC18.66■□□□□ 0.58
CPSF4LA6NMK7 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
CPSF4LA6NMK7 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CPSF4LA6NMK7 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC18.66■□□□□ 0.58
CPSF4LA6NMK7 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CPSF4LA6NMK7 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CPSF4LA6NMK7 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CPSF4LA6NMK7 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CPSF4LA6NMK7 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CPSF4LA6NMK7 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CPSF4LA6NMK7 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CPSF4LA6NMK7 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CPSF4LA6NMK7 KRT19P1-201ENST00000405746 1186 ntBASIC18.66■□□□□ 0.58
CPSF4LA6NMK7 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CPSF4LA6NMK7 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC18.66■□□□□ 0.58
CPSF4LA6NMK7 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC18.66■□□□□ 0.58
CPSF4LA6NMK7 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CPSF4LA6NMK7 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC18.66■□□□□ 0.58
CPSF4LA6NMK7 KRT18P61-201ENST00000585825 1298 ntBASIC18.66■□□□□ 0.58
CPSF4LA6NMK7 UBE2DNL-204ENST00000602536 740 ntBASIC18.66■□□□□ 0.58
CPSF4LA6NMK7 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
CPSF4LA6NMK7 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC18.66■□□□□ 0.58
CPSF4LA6NMK7 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC18.66■□□□□ 0.58
CPSF4LA6NMK7 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CPSF4LA6NMK7 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC18.66■□□□□ 0.58
CPSF4LA6NMK7 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC18.66■□□□□ 0.58
CPSF4LA6NMK7 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CPSF4LA6NMK7 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CPSF4LA6NMK7 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
CPSF4LA6NMK7 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CPSF4LA6NMK7 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CPSF4LA6NMK7 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CPSF4LA6NMK7 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CPSF4LA6NMK7 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
CPSF4LA6NMK7 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
CPSF4LA6NMK7 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
CPSF4LA6NMK7 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CPSF4LA6NMK7 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CPSF4LA6NMK7 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CPSF4LA6NMK7 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CPSF4LA6NMK7 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CPSF4LA6NMK7 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC18.65■□□□□ 0.58
CPSF4LA6NMK7 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CPSF4LA6NMK7 SLC7A5P1-201ENST00000568957 537 ntBASIC18.65■□□□□ 0.58
CPSF4LA6NMK7 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC18.65■□□□□ 0.58
CPSF4LA6NMK7 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
CPSF4LA6NMK7 BID-204ENST00000399767 2129 ntTSL 2 BASIC18.65■□□□□ 0.58
CPSF4LA6NMK7 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC18.65■□□□□ 0.58
CPSF4LA6NMK7 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CPSF4LA6NMK7 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CPSF4LA6NMK7 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CPSF4LA6NMK7 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
CPSF4LA6NMK7 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC18.64■□□□□ 0.58
CPSF4LA6NMK7 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
CPSF4LA6NMK7 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
CPSF4LA6NMK7 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CPSF4LA6NMK7 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
CPSF4LA6NMK7 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC18.64■□□□□ 0.57
CPSF4LA6NMK7 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CPSF4LA6NMK7 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
CPSF4LA6NMK7 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CPSF4LA6NMK7 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CPSF4LA6NMK7 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CPSF4LA6NMK7 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
CPSF4LA6NMK7 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC18.64■□□□□ 0.57
CPSF4LA6NMK7 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CPSF4LA6NMK7 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CPSF4LA6NMK7 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CPSF4LA6NMK7 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC18.64■□□□□ 0.57
CPSF4LA6NMK7 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
CPSF4LA6NMK7 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CPSF4LA6NMK7 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CPSF4LA6NMK7 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CPSF4LA6NMK7 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CPSF4LA6NMK7 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC18.63■□□□□ 0.57
CPSF4LA6NMK7 TCF3P1-201ENST00000423021 1937 ntBASIC18.63■□□□□ 0.57
CPSF4LA6NMK7 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CPSF4LA6NMK7 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC18.63■□□□□ 0.57
CPSF4LA6NMK7 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms