Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC20.63■□□□□ 0.89
TCRBV7S3A2A0A539 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC20.63■□□□□ 0.89
TCRBV7S3A2A0A539 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
TCRBV7S3A2A0A539 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TCRBV7S3A2A0A539 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC20.62■□□□□ 0.89
TCRBV7S3A2A0A539 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TCRBV7S3A2A0A539 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TCRBV7S3A2A0A539 AL691432.2-201ENST00000607222 2038 ntBASIC20.62■□□□□ 0.89
TCRBV7S3A2A0A539 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC20.62■□□□□ 0.89
TCRBV7S3A2A0A539 PARP1-202ENST00000366792 553 ntTSL 3 BASIC20.62■□□□□ 0.89
TCRBV7S3A2A0A539 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TCRBV7S3A2A0A539 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TCRBV7S3A2A0A539 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC20.62■□□□□ 0.89
TCRBV7S3A2A0A539 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC20.62■□□□□ 0.89
TCRBV7S3A2A0A539 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC20.62■□□□□ 0.89
TCRBV7S3A2A0A539 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
TCRBV7S3A2A0A539 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
TCRBV7S3A2A0A539 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
TCRBV7S3A2A0A539 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
TCRBV7S3A2A0A539 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TCRBV7S3A2A0A539 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
TCRBV7S3A2A0A539 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TCRBV7S3A2A0A539 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
TCRBV7S3A2A0A539 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.61■□□□□ 0.89
TCRBV7S3A2A0A539 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC20.61■□□□□ 0.89
TCRBV7S3A2A0A539 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TCRBV7S3A2A0A539 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC20.61■□□□□ 0.89
TCRBV7S3A2A0A539 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
TCRBV7S3A2A0A539 NTF6G-201ENST00000591094 616 ntBASIC20.61■□□□□ 0.89
TCRBV7S3A2A0A539 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC20.61■□□□□ 0.89
TCRBV7S3A2A0A539 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC20.61■□□□□ 0.89
TCRBV7S3A2A0A539 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
TCRBV7S3A2A0A539 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TCRBV7S3A2A0A539 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
TCRBV7S3A2A0A539 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
TCRBV7S3A2A0A539 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TCRBV7S3A2A0A539 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC20.6■□□□□ 0.89
TCRBV7S3A2A0A539 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TCRBV7S3A2A0A539 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TCRBV7S3A2A0A539 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC20.6■□□□□ 0.89
TCRBV7S3A2A0A539 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
TCRBV7S3A2A0A539 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC20.6■□□□□ 0.89
TCRBV7S3A2A0A539 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
TCRBV7S3A2A0A539 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.6■□□□□ 0.89
TCRBV7S3A2A0A539 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TCRBV7S3A2A0A539 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC20.6■□□□□ 0.89
TCRBV7S3A2A0A539 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TCRBV7S3A2A0A539 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC20.6■□□□□ 0.89
TCRBV7S3A2A0A539 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TCRBV7S3A2A0A539 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC20.6■□□□□ 0.89
TCRBV7S3A2A0A539 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TCRBV7S3A2A0A539 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TCRBV7S3A2A0A539 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
TCRBV7S3A2A0A539 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
TCRBV7S3A2A0A539 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
TCRBV7S3A2A0A539 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TCRBV7S3A2A0A539 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TCRBV7S3A2A0A539 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TCRBV7S3A2A0A539 AL158211.5-201ENST00000623583 2518 ntBASIC20.6■□□□□ 0.89
TCRBV7S3A2A0A539 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
TCRBV7S3A2A0A539 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TCRBV7S3A2A0A539 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC20.6■□□□□ 0.89
TCRBV7S3A2A0A539 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
TCRBV7S3A2A0A539 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
TCRBV7S3A2A0A539 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
TCRBV7S3A2A0A539 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC20.59■□□□□ 0.89
TCRBV7S3A2A0A539 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC20.59■□□□□ 0.89
TCRBV7S3A2A0A539 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TCRBV7S3A2A0A539 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
TCRBV7S3A2A0A539 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC20.59■□□□□ 0.89
TCRBV7S3A2A0A539 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TCRBV7S3A2A0A539 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TCRBV7S3A2A0A539 CDV3P1-201ENST00000471403 739 ntBASIC20.59■□□□□ 0.89
TCRBV7S3A2A0A539 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
TCRBV7S3A2A0A539 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
TCRBV7S3A2A0A539 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TCRBV7S3A2A0A539 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC20.59■□□□□ 0.89
TCRBV7S3A2A0A539 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC20.59■□□□□ 0.89
TCRBV7S3A2A0A539 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TCRBV7S3A2A0A539 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC20.59■□□□□ 0.89
TCRBV7S3A2A0A539 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
TCRBV7S3A2A0A539 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
TCRBV7S3A2A0A539 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TCRBV7S3A2A0A539 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
TCRBV7S3A2A0A539 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC20.58■□□□□ 0.89
TCRBV7S3A2A0A539 BRI3-207ENST00000539286 699 ntTSL 2 BASIC20.58■□□□□ 0.89
TCRBV7S3A2A0A539 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC20.58■□□□□ 0.89
TCRBV7S3A2A0A539 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC20.58■□□□□ 0.89
TCRBV7S3A2A0A539 FAM21FP-204ENST00000608637 956 ntBASIC20.58■□□□□ 0.89
TCRBV7S3A2A0A539 H19-201ENST00000411754 1788 ntTSL 5 BASIC20.58■□□□□ 0.89
TCRBV7S3A2A0A539 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC20.58■□□□□ 0.88
TCRBV7S3A2A0A539 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
TCRBV7S3A2A0A539 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
TCRBV7S3A2A0A539 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
TCRBV7S3A2A0A539 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
TCRBV7S3A2A0A539 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
TCRBV7S3A2A0A539 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
TCRBV7S3A2A0A539 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
TCRBV7S3A2A0A539 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC20.58■□□□□ 0.88
TCRBV7S3A2A0A539 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms