Protein–RNA interactions for Protein: Q9Y5Y9

SCN10A, Sodium channel protein type 10 subunit alpha, humanhuman

Predictions only

Length 1,956 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN10AQ9Y5Y9 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
SCN10AQ9Y5Y9 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC22.47■■□□□ 1.19
SCN10AQ9Y5Y9 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC22.47■■□□□ 1.19
SCN10AQ9Y5Y9 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC22.47■■□□□ 1.19
SCN10AQ9Y5Y9 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC22.46■■□□□ 1.19
SCN10AQ9Y5Y9 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
SCN10AQ9Y5Y9 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
SCN10AQ9Y5Y9 KRT8P36-201ENST00000489121 1440 ntBASIC22.46■■□□□ 1.19
SCN10AQ9Y5Y9 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
SCN10AQ9Y5Y9 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC22.46■■□□□ 1.19
SCN10AQ9Y5Y9 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC22.46■■□□□ 1.19
SCN10AQ9Y5Y9 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
SCN10AQ9Y5Y9 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
SCN10AQ9Y5Y9 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
SCN10AQ9Y5Y9 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
SCN10AQ9Y5Y9 NUDT16P1-203ENST00000513809 620 ntBASIC22.46■■□□□ 1.19
SCN10AQ9Y5Y9 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
SCN10AQ9Y5Y9 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC22.46■■□□□ 1.19
SCN10AQ9Y5Y9 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
SCN10AQ9Y5Y9 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
SCN10AQ9Y5Y9 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC22.45■■□□□ 1.19
SCN10AQ9Y5Y9 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.19
SCN10AQ9Y5Y9 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC22.45■■□□□ 1.18
SCN10AQ9Y5Y9 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
SCN10AQ9Y5Y9 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC22.45■■□□□ 1.18
SCN10AQ9Y5Y9 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC22.45■■□□□ 1.18
SCN10AQ9Y5Y9 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC22.45■■□□□ 1.18
SCN10AQ9Y5Y9 AC023632.3-201ENST00000521633 145 ntBASIC22.45■■□□□ 1.18
SCN10AQ9Y5Y9 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC22.45■■□□□ 1.18
SCN10AQ9Y5Y9 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC22.45■■□□□ 1.18
SCN10AQ9Y5Y9 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.18
SCN10AQ9Y5Y9 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
SCN10AQ9Y5Y9 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
SCN10AQ9Y5Y9 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC22.45■■□□□ 1.18
SCN10AQ9Y5Y9 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC22.45■■□□□ 1.18
SCN10AQ9Y5Y9 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
SCN10AQ9Y5Y9 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC22.45■■□□□ 1.18
SCN10AQ9Y5Y9 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC22.45■■□□□ 1.18
SCN10AQ9Y5Y9 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
SCN10AQ9Y5Y9 KRT16P5-201ENST00000455284 522 ntBASIC22.45■■□□□ 1.18
SCN10AQ9Y5Y9 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC22.45■■□□□ 1.18
SCN10AQ9Y5Y9 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC22.45■■□□□ 1.18
SCN10AQ9Y5Y9 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC22.45■■□□□ 1.18
SCN10AQ9Y5Y9 AC133561.5-201ENST00000635547 218 ntBASIC22.45■■□□□ 1.18
SCN10AQ9Y5Y9 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
SCN10AQ9Y5Y9 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC22.44■■□□□ 1.18
SCN10AQ9Y5Y9 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC22.44■■□□□ 1.18
SCN10AQ9Y5Y9 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
SCN10AQ9Y5Y9 RCN1P1-201ENST00000400413 996 ntBASIC22.44■■□□□ 1.18
SCN10AQ9Y5Y9 MAX-217ENST00000557277 728 ntTSL 3 BASIC22.44■■□□□ 1.18
SCN10AQ9Y5Y9 AL353708.3-201ENST00000610272 989 ntBASIC22.44■■□□□ 1.18
SCN10AQ9Y5Y9 AC010331.1-201ENST00000611423 582 ntBASIC22.44■■□□□ 1.18
SCN10AQ9Y5Y9 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
SCN10AQ9Y5Y9 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
SCN10AQ9Y5Y9 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC22.44■■□□□ 1.18
SCN10AQ9Y5Y9 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
SCN10AQ9Y5Y9 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC22.44■■□□□ 1.18
SCN10AQ9Y5Y9 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
SCN10AQ9Y5Y9 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
SCN10AQ9Y5Y9 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC22.43■■□□□ 1.18
SCN10AQ9Y5Y9 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC22.43■■□□□ 1.18
SCN10AQ9Y5Y9 PTBP1P-201ENST00000554374 1601 ntBASIC22.43■■□□□ 1.18
SCN10AQ9Y5Y9 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
SCN10AQ9Y5Y9 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
SCN10AQ9Y5Y9 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC22.43■■□□□ 1.18
SCN10AQ9Y5Y9 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC22.43■■□□□ 1.18
SCN10AQ9Y5Y9 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC22.43■■□□□ 1.18
SCN10AQ9Y5Y9 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
SCN10AQ9Y5Y9 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC22.43■■□□□ 1.18
SCN10AQ9Y5Y9 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC22.43■■□□□ 1.18
SCN10AQ9Y5Y9 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
SCN10AQ9Y5Y9 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
SCN10AQ9Y5Y9 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
SCN10AQ9Y5Y9 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
SCN10AQ9Y5Y9 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC22.43■■□□□ 1.18
SCN10AQ9Y5Y9 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC22.43■■□□□ 1.18
SCN10AQ9Y5Y9 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC22.43■■□□□ 1.18
SCN10AQ9Y5Y9 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
SCN10AQ9Y5Y9 STK25-205ENST00000405883 1904 ntTSL 2 BASIC22.42■■□□□ 1.18
SCN10AQ9Y5Y9 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC22.42■■□□□ 1.18
SCN10AQ9Y5Y9 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
SCN10AQ9Y5Y9 AL353807.1-201ENST00000427475 662 ntBASIC22.42■■□□□ 1.18
SCN10AQ9Y5Y9 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
SCN10AQ9Y5Y9 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC22.42■■□□□ 1.18
SCN10AQ9Y5Y9 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC22.42■■□□□ 1.18
SCN10AQ9Y5Y9 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
SCN10AQ9Y5Y9 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
SCN10AQ9Y5Y9 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC22.42■■□□□ 1.18
SCN10AQ9Y5Y9 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC22.42■■□□□ 1.18
SCN10AQ9Y5Y9 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC22.42■■□□□ 1.18
SCN10AQ9Y5Y9 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
SCN10AQ9Y5Y9 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC22.41■■□□□ 1.18
SCN10AQ9Y5Y9 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
SCN10AQ9Y5Y9 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC22.41■■□□□ 1.18
SCN10AQ9Y5Y9 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
SCN10AQ9Y5Y9 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
SCN10AQ9Y5Y9 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC22.41■■□□□ 1.18
SCN10AQ9Y5Y9 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC22.41■■□□□ 1.18
SCN10AQ9Y5Y9 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
SCN10AQ9Y5Y9 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC22.41■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms