Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PCDHA3Q9Y5H8 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PCDHA3Q9Y5H8 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
PCDHA3Q9Y5H8 KRT19P1-201ENST00000405746 1186 ntBASIC21.22■□□□□ 0.99
PCDHA3Q9Y5H8 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
PCDHA3Q9Y5H8 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
PCDHA3Q9Y5H8 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC21.22■□□□□ 0.99
PCDHA3Q9Y5H8 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC21.22■□□□□ 0.99
PCDHA3Q9Y5H8 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PCDHA3Q9Y5H8 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC21.22■□□□□ 0.99
PCDHA3Q9Y5H8 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
PCDHA3Q9Y5H8 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC21.22■□□□□ 0.99
PCDHA3Q9Y5H8 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PCDHA3Q9Y5H8 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PCDHA3Q9Y5H8 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC21.21■□□□□ 0.99
PCDHA3Q9Y5H8 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
PCDHA3Q9Y5H8 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC21.21■□□□□ 0.99
PCDHA3Q9Y5H8 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
PCDHA3Q9Y5H8 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PCDHA3Q9Y5H8 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PCDHA3Q9Y5H8 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
PCDHA3Q9Y5H8 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
PCDHA3Q9Y5H8 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
PCDHA3Q9Y5H8 ZNRF2P3-201ENST00000424200 374 ntBASIC21.21■□□□□ 0.99
PCDHA3Q9Y5H8 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC21.21■□□□□ 0.99
PCDHA3Q9Y5H8 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
PCDHA3Q9Y5H8 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
PCDHA3Q9Y5H8 GALNS-213ENST00000569433 723 ntTSL 3 BASIC21.21■□□□□ 0.99
PCDHA3Q9Y5H8 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
PCDHA3Q9Y5H8 FAM21FP-204ENST00000608637 956 ntBASIC21.21■□□□□ 0.99
PCDHA3Q9Y5H8 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PCDHA3Q9Y5H8 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PCDHA3Q9Y5H8 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
PCDHA3Q9Y5H8 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC21.21■□□□□ 0.99
PCDHA3Q9Y5H8 DPP3P2-201ENST00000416030 1696 ntBASIC21.21■□□□□ 0.99
PCDHA3Q9Y5H8 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PCDHA3Q9Y5H8 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC21.21■□□□□ 0.99
PCDHA3Q9Y5H8 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC21.21■□□□□ 0.99
PCDHA3Q9Y5H8 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC21.2■□□□□ 0.98
PCDHA3Q9Y5H8 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
PCDHA3Q9Y5H8 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC21.2■□□□□ 0.98
PCDHA3Q9Y5H8 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC21.2■□□□□ 0.98
PCDHA3Q9Y5H8 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PCDHA3Q9Y5H8 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PCDHA3Q9Y5H8 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PCDHA3Q9Y5H8 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
PCDHA3Q9Y5H8 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
PCDHA3Q9Y5H8 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC21.2■□□□□ 0.98
PCDHA3Q9Y5H8 CDV3P1-201ENST00000471403 739 ntBASIC21.2■□□□□ 0.98
PCDHA3Q9Y5H8 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC21.2■□□□□ 0.98
PCDHA3Q9Y5H8 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PCDHA3Q9Y5H8 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC21.2■□□□□ 0.98
PCDHA3Q9Y5H8 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC21.2■□□□□ 0.98
PCDHA3Q9Y5H8 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC21.2■□□□□ 0.98
PCDHA3Q9Y5H8 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
PCDHA3Q9Y5H8 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PCDHA3Q9Y5H8 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PCDHA3Q9Y5H8 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PCDHA3Q9Y5H8 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PCDHA3Q9Y5H8 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
PCDHA3Q9Y5H8 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
PCDHA3Q9Y5H8 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PCDHA3Q9Y5H8 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PCDHA3Q9Y5H8 UBE2DNL-204ENST00000602536 740 ntBASIC21.19■□□□□ 0.98
PCDHA3Q9Y5H8 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
PCDHA3Q9Y5H8 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC21.19■□□□□ 0.98
PCDHA3Q9Y5H8 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC21.19■□□□□ 0.98
PCDHA3Q9Y5H8 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PCDHA3Q9Y5H8 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PCDHA3Q9Y5H8 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PCDHA3Q9Y5H8 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
PCDHA3Q9Y5H8 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC21.18■□□□□ 0.98
PCDHA3Q9Y5H8 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PCDHA3Q9Y5H8 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PCDHA3Q9Y5H8 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC21.18■□□□□ 0.98
PCDHA3Q9Y5H8 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PCDHA3Q9Y5H8 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
PCDHA3Q9Y5H8 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
PCDHA3Q9Y5H8 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PCDHA3Q9Y5H8 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC21.18■□□□□ 0.98
PCDHA3Q9Y5H8 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PCDHA3Q9Y5H8 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC21.18■□□□□ 0.98
PCDHA3Q9Y5H8 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
PCDHA3Q9Y5H8 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
PCDHA3Q9Y5H8 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PCDHA3Q9Y5H8 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC21.18■□□□□ 0.98
PCDHA3Q9Y5H8 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC21.18■□□□□ 0.98
PCDHA3Q9Y5H8 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PCDHA3Q9Y5H8 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PCDHA3Q9Y5H8 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PCDHA3Q9Y5H8 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
PCDHA3Q9Y5H8 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
PCDHA3Q9Y5H8 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PCDHA3Q9Y5H8 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
PCDHA3Q9Y5H8 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC21.17■□□□□ 0.98
PCDHA3Q9Y5H8 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC21.17■□□□□ 0.98
PCDHA3Q9Y5H8 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
PCDHA3Q9Y5H8 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC21.17■□□□□ 0.98
PCDHA3Q9Y5H8 LBX2-AS1-202ENST00000603175 2083 ntBASIC21.17■□□□□ 0.98
PCDHA3Q9Y5H8 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC21.17■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms