Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.13■□□□□ 0.81
TRIM39Q9HCM9 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC20.13■□□□□ 0.81
TRIM39Q9HCM9 KRT8P36-201ENST00000489121 1440 ntBASIC20.13■□□□□ 0.81
TRIM39Q9HCM9 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC20.13■□□□□ 0.81
TRIM39Q9HCM9 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TRIM39Q9HCM9 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.13■□□□□ 0.81
TRIM39Q9HCM9 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC20.13■□□□□ 0.81
TRIM39Q9HCM9 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC20.13■□□□□ 0.81
TRIM39Q9HCM9 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
TRIM39Q9HCM9 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
TRIM39Q9HCM9 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
TRIM39Q9HCM9 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
TRIM39Q9HCM9 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.13■□□□□ 0.81
TRIM39Q9HCM9 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
TRIM39Q9HCM9 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
TRIM39Q9HCM9 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
TRIM39Q9HCM9 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
TRIM39Q9HCM9 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC20.12■□□□□ 0.81
TRIM39Q9HCM9 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.12■□□□□ 0.81
TRIM39Q9HCM9 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRIM39Q9HCM9 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRIM39Q9HCM9 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRIM39Q9HCM9 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC20.12■□□□□ 0.81
TRIM39Q9HCM9 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC20.12■□□□□ 0.81
TRIM39Q9HCM9 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
TRIM39Q9HCM9 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.12■□□□□ 0.81
TRIM39Q9HCM9 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC20.12■□□□□ 0.81
TRIM39Q9HCM9 NME6-213ENST00000451657 871 ntTSL 2 BASIC20.12■□□□□ 0.81
TRIM39Q9HCM9 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC20.12■□□□□ 0.81
TRIM39Q9HCM9 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC20.12■□□□□ 0.81
TRIM39Q9HCM9 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC20.12■□□□□ 0.81
TRIM39Q9HCM9 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC20.12■□□□□ 0.81
TRIM39Q9HCM9 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC20.12■□□□□ 0.81
TRIM39Q9HCM9 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC20.12■□□□□ 0.81
TRIM39Q9HCM9 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
TRIM39Q9HCM9 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRIM39Q9HCM9 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC20.12■□□□□ 0.81
TRIM39Q9HCM9 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRIM39Q9HCM9 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
TRIM39Q9HCM9 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRIM39Q9HCM9 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRIM39Q9HCM9 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
TRIM39Q9HCM9 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
TRIM39Q9HCM9 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM39Q9HCM9 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC20.11■□□□□ 0.81
TRIM39Q9HCM9 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM39Q9HCM9 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.11■□□□□ 0.81
TRIM39Q9HCM9 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM39Q9HCM9 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM39Q9HCM9 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM39Q9HCM9 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM39Q9HCM9 KRT18P6-201ENST00000555540 1265 ntBASIC20.11■□□□□ 0.81
TRIM39Q9HCM9 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC20.11■□□□□ 0.81
TRIM39Q9HCM9 AC083880.1-201ENST00000608266 535 ntBASIC20.11■□□□□ 0.81
TRIM39Q9HCM9 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC20.11■□□□□ 0.81
TRIM39Q9HCM9 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
TRIM39Q9HCM9 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC20.11■□□□□ 0.81
TRIM39Q9HCM9 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.11■□□□□ 0.81
TRIM39Q9HCM9 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM39Q9HCM9 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM39Q9HCM9 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
TRIM39Q9HCM9 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM39Q9HCM9 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM39Q9HCM9 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM39Q9HCM9 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.1■□□□□ 0.81
TRIM39Q9HCM9 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM39Q9HCM9 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM39Q9HCM9 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC20.1■□□□□ 0.81
TRIM39Q9HCM9 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC20.1■□□□□ 0.81
TRIM39Q9HCM9 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM39Q9HCM9 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM39Q9HCM9 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC20.1■□□□□ 0.81
TRIM39Q9HCM9 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM39Q9HCM9 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM39Q9HCM9 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC20.1■□□□□ 0.81
TRIM39Q9HCM9 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM39Q9HCM9 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM39Q9HCM9 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM39Q9HCM9 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM39Q9HCM9 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
TRIM39Q9HCM9 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRIM39Q9HCM9 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRIM39Q9HCM9 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
TRIM39Q9HCM9 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
TRIM39Q9HCM9 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
TRIM39Q9HCM9 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC20.09■□□□□ 0.81
TRIM39Q9HCM9 C2orf69P4-201ENST00000565394 541 ntBASIC20.09■□□□□ 0.81
TRIM39Q9HCM9 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC20.09■□□□□ 0.81
TRIM39Q9HCM9 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC20.09■□□□□ 0.81
TRIM39Q9HCM9 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRIM39Q9HCM9 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRIM39Q9HCM9 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
TRIM39Q9HCM9 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRIM39Q9HCM9 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC20.08■□□□□ 0.81
TRIM39Q9HCM9 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
TRIM39Q9HCM9 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.81
TRIM39Q9HCM9 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
TRIM39Q9HCM9 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
TRIM39Q9HCM9 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC20.08■□□□□ 0.81
TRIM39Q9HCM9 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC20.08■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms