Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.17■□□□□ 0.82
VPS35Q96QK1 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC20.17■□□□□ 0.82
VPS35Q96QK1 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS35Q96QK1 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC20.17■□□□□ 0.82
VPS35Q96QK1 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.17■□□□□ 0.82
VPS35Q96QK1 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
VPS35Q96QK1 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.16■□□□□ 0.82
VPS35Q96QK1 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS35Q96QK1 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS35Q96QK1 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS35Q96QK1 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC20.16■□□□□ 0.82
VPS35Q96QK1 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
VPS35Q96QK1 DUSP5P2-201ENST00000426873 1033 ntBASIC20.16■□□□□ 0.82
VPS35Q96QK1 HES2-205ENST00000487437 968 ntTSL 3 BASIC20.16■□□□□ 0.82
VPS35Q96QK1 AC098934.4-201ENST00000564127 592 ntBASIC20.16■□□□□ 0.82
VPS35Q96QK1 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC20.16■□□□□ 0.82
VPS35Q96QK1 MYC-209ENST00000641252 345 ntBASIC20.16■□□□□ 0.82
VPS35Q96QK1 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS35Q96QK1 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS35Q96QK1 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS35Q96QK1 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
VPS35Q96QK1 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
VPS35Q96QK1 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS35Q96QK1 FP700111.2-201ENST00000619190 1892 ntBASIC20.16■□□□□ 0.82
VPS35Q96QK1 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS35Q96QK1 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS35Q96QK1 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
VPS35Q96QK1 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS35Q96QK1 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS35Q96QK1 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.15■□□□□ 0.82
VPS35Q96QK1 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS35Q96QK1 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
VPS35Q96QK1 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS35Q96QK1 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC20.15■□□□□ 0.82
VPS35Q96QK1 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC20.15■□□□□ 0.82
VPS35Q96QK1 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
VPS35Q96QK1 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC20.15■□□□□ 0.82
VPS35Q96QK1 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC20.15■□□□□ 0.82
VPS35Q96QK1 NXN-202ENST00000537628 1340 ntTSL 3 BASIC20.15■□□□□ 0.82
VPS35Q96QK1 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
VPS35Q96QK1 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC20.15■□□□□ 0.82
VPS35Q96QK1 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.15■□□□□ 0.82
VPS35Q96QK1 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
VPS35Q96QK1 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.82
VPS35Q96QK1 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VPS35Q96QK1 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC20.14■□□□□ 0.81
VPS35Q96QK1 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.14■□□□□ 0.81
VPS35Q96QK1 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
VPS35Q96QK1 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.14■□□□□ 0.81
VPS35Q96QK1 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
VPS35Q96QK1 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC20.14■□□□□ 0.81
VPS35Q96QK1 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
VPS35Q96QK1 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VPS35Q96QK1 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
VPS35Q96QK1 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VPS35Q96QK1 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VPS35Q96QK1 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
VPS35Q96QK1 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC20.14■□□□□ 0.81
VPS35Q96QK1 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
VPS35Q96QK1 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC20.14■□□□□ 0.81
VPS35Q96QK1 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC20.14■□□□□ 0.81
VPS35Q96QK1 RHEB-204ENST00000472642 900 ntTSL 3 BASIC20.14■□□□□ 0.81
VPS35Q96QK1 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
VPS35Q96QK1 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VPS35Q96QK1 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
VPS35Q96QK1 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VPS35Q96QK1 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
VPS35Q96QK1 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VPS35Q96QK1 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VPS35Q96QK1 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC20.14■□□□□ 0.81
VPS35Q96QK1 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VPS35Q96QK1 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VPS35Q96QK1 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
VPS35Q96QK1 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VPS35Q96QK1 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
VPS35Q96QK1 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
VPS35Q96QK1 OR2A1-AS1-201ENST00000462305 773 ntBASIC20.13■□□□□ 0.81
VPS35Q96QK1 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC20.13■□□□□ 0.81
VPS35Q96QK1 AC097658.1-201ENST00000475555 843 ntBASIC20.13■□□□□ 0.81
VPS35Q96QK1 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC20.13■□□□□ 0.81
VPS35Q96QK1 BET1L-207ENST00000529614 560 ntTSL 5 BASIC20.13■□□□□ 0.81
VPS35Q96QK1 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VPS35Q96QK1 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
VPS35Q96QK1 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.13■□□□□ 0.81
VPS35Q96QK1 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.13■□□□□ 0.81
VPS35Q96QK1 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VPS35Q96QK1 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VPS35Q96QK1 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
VPS35Q96QK1 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VPS35Q96QK1 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.12■□□□□ 0.81
VPS35Q96QK1 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
VPS35Q96QK1 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
VPS35Q96QK1 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC20.12■□□□□ 0.81
VPS35Q96QK1 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VPS35Q96QK1 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VPS35Q96QK1 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
VPS35Q96QK1 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
VPS35Q96QK1 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
VPS35Q96QK1 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC20.12■□□□□ 0.81
VPS35Q96QK1 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms