Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SKA1Q96BD8 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SKA1Q96BD8 AP005212.1-201ENST00000581547 1997 ntBASIC20.79■□□□□ 0.92
SKA1Q96BD8 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SKA1Q96BD8 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
SKA1Q96BD8 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SKA1Q96BD8 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SKA1Q96BD8 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SKA1Q96BD8 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SKA1Q96BD8 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC20.79■□□□□ 0.92
SKA1Q96BD8 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC20.79■□□□□ 0.92
SKA1Q96BD8 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SKA1Q96BD8 IRX5-204ENST00000560154 879 ntTSL 5 BASIC20.79■□□□□ 0.92
SKA1Q96BD8 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SKA1Q96BD8 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SKA1Q96BD8 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
SKA1Q96BD8 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SKA1Q96BD8 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SKA1Q96BD8 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
SKA1Q96BD8 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC20.78■□□□□ 0.92
SKA1Q96BD8 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SKA1Q96BD8 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
SKA1Q96BD8 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SKA1Q96BD8 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SKA1Q96BD8 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC20.78■□□□□ 0.92
SKA1Q96BD8 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SKA1Q96BD8 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SKA1Q96BD8 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SKA1Q96BD8 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20.77■□□□□ 0.92
SKA1Q96BD8 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SKA1Q96BD8 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
SKA1Q96BD8 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
SKA1Q96BD8 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC20.77■□□□□ 0.92
SKA1Q96BD8 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
SKA1Q96BD8 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
SKA1Q96BD8 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC20.77■□□□□ 0.92
SKA1Q96BD8 RARRES2P4-201ENST00000514074 484 ntBASIC20.77■□□□□ 0.92
SKA1Q96BD8 FGF8-207ENST00000618991 856 ntTSL 3 BASIC20.77■□□□□ 0.92
SKA1Q96BD8 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
SKA1Q96BD8 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC20.77■□□□□ 0.92
SKA1Q96BD8 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SKA1Q96BD8 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.77■□□□□ 0.92
SKA1Q96BD8 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
SKA1Q96BD8 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.77■□□□□ 0.91
SKA1Q96BD8 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
SKA1Q96BD8 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
SKA1Q96BD8 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SKA1Q96BD8 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
SKA1Q96BD8 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SKA1Q96BD8 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.76■□□□□ 0.91
SKA1Q96BD8 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC20.76■□□□□ 0.91
SKA1Q96BD8 SERPINH1P1-201ENST00000419794 1249 ntBASIC20.76■□□□□ 0.91
SKA1Q96BD8 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC20.76■□□□□ 0.91
SKA1Q96BD8 RHEB-204ENST00000472642 900 ntTSL 3 BASIC20.76■□□□□ 0.91
SKA1Q96BD8 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC20.76■□□□□ 0.91
SKA1Q96BD8 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC20.76■□□□□ 0.91
SKA1Q96BD8 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
SKA1Q96BD8 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SKA1Q96BD8 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SKA1Q96BD8 ME2-216ENST00000639850 2331 ntTSL 5 BASIC20.76■□□□□ 0.91
SKA1Q96BD8 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SKA1Q96BD8 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.76■□□□□ 0.91
SKA1Q96BD8 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SKA1Q96BD8 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SKA1Q96BD8 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SKA1Q96BD8 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
SKA1Q96BD8 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC20.75■□□□□ 0.91
SKA1Q96BD8 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC20.75■□□□□ 0.91
SKA1Q96BD8 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC20.75■□□□□ 0.91
SKA1Q96BD8 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SKA1Q96BD8 CD44-222ENST00000526025 1052 ntTSL 2 BASIC20.75■□□□□ 0.91
SKA1Q96BD8 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC20.75■□□□□ 0.91
SKA1Q96BD8 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SKA1Q96BD8 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.75■□□□□ 0.91
SKA1Q96BD8 AC010980.2-201ENST00000587099 1412 ntBASIC20.75■□□□□ 0.91
SKA1Q96BD8 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC20.75■□□□□ 0.91
SKA1Q96BD8 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.74■□□□□ 0.91
SKA1Q96BD8 AC073314.1-201ENST00000568729 2216 ntBASIC20.74■□□□□ 0.91
SKA1Q96BD8 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SKA1Q96BD8 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
SKA1Q96BD8 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
SKA1Q96BD8 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
SKA1Q96BD8 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
SKA1Q96BD8 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SKA1Q96BD8 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SKA1Q96BD8 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SKA1Q96BD8 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SKA1Q96BD8 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC20.74■□□□□ 0.91
SKA1Q96BD8 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC20.74■□□□□ 0.91
SKA1Q96BD8 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SKA1Q96BD8 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
SKA1Q96BD8 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC20.74■□□□□ 0.91
SKA1Q96BD8 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SKA1Q96BD8 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC20.74■□□□□ 0.91
SKA1Q96BD8 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SKA1Q96BD8 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
SKA1Q96BD8 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SKA1Q96BD8 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC20.73■□□□□ 0.91
SKA1Q96BD8 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SKA1Q96BD8 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms