Protein–RNA interactions for Protein: Q8TBC3

SHKBP1, SH3KBP1-binding protein 1, humanhuman

Predictions only

Length 707 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1Q8TBC3 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC21.38■■□□□ 1.01
SHKBP1Q8TBC3 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SHKBP1Q8TBC3 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SHKBP1Q8TBC3 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SHKBP1Q8TBC3 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC21.38■■□□□ 1.01
SHKBP1Q8TBC3 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC21.38■■□□□ 1.01
SHKBP1Q8TBC3 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
SHKBP1Q8TBC3 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SHKBP1Q8TBC3 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SHKBP1Q8TBC3 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
SHKBP1Q8TBC3 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC21.37■■□□□ 1.01
SHKBP1Q8TBC3 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SHKBP1Q8TBC3 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC21.37■■□□□ 1.01
SHKBP1Q8TBC3 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC21.37■■□□□ 1.01
SHKBP1Q8TBC3 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
SHKBP1Q8TBC3 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC21.37■■□□□ 1.01
SHKBP1Q8TBC3 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC21.37■■□□□ 1.01
SHKBP1Q8TBC3 ARL16-209ENST00000573715 763 ntTSL 3 BASIC21.37■■□□□ 1.01
SHKBP1Q8TBC3 ARL16-211ENST00000576135 694 ntTSL 3 BASIC21.37■■□□□ 1.01
SHKBP1Q8TBC3 FAM197Y4-202ENST00000622692 608 ntBASIC21.37■■□□□ 1.01
SHKBP1Q8TBC3 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC21.37■■□□□ 1.01
SHKBP1Q8TBC3 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
SHKBP1Q8TBC3 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC21.37■■□□□ 1.01
SHKBP1Q8TBC3 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SHKBP1Q8TBC3 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC21.37■■□□□ 1.01
SHKBP1Q8TBC3 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC21.36■■□□□ 1.01
SHKBP1Q8TBC3 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SHKBP1Q8TBC3 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SHKBP1Q8TBC3 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
SHKBP1Q8TBC3 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC21.36■■□□□ 1.01
SHKBP1Q8TBC3 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
SHKBP1Q8TBC3 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SHKBP1Q8TBC3 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC21.36■■□□□ 1.01
SHKBP1Q8TBC3 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SHKBP1Q8TBC3 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC21.36■■□□□ 1.01
SHKBP1Q8TBC3 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC21.36■■□□□ 1.01
SHKBP1Q8TBC3 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC21.36■■□□□ 1.01
SHKBP1Q8TBC3 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC21.36■■□□□ 1.01
SHKBP1Q8TBC3 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SHKBP1Q8TBC3 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC21.36■■□□□ 1.01
SHKBP1Q8TBC3 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SHKBP1Q8TBC3 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SHKBP1Q8TBC3 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC21.36■■□□□ 1.01
SHKBP1Q8TBC3 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC21.35■■□□□ 1.01
SHKBP1Q8TBC3 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
SHKBP1Q8TBC3 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SHKBP1Q8TBC3 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SHKBP1Q8TBC3 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SHKBP1Q8TBC3 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SHKBP1Q8TBC3 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC21.35■■□□□ 1.01
SHKBP1Q8TBC3 POM121L13P-201ENST00000422362 380 ntBASIC21.35■■□□□ 1.01
SHKBP1Q8TBC3 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC21.35■■□□□ 1.01
SHKBP1Q8TBC3 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
SHKBP1Q8TBC3 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC21.35■■□□□ 1.01
SHKBP1Q8TBC3 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC21.35■■□□□ 1.01
SHKBP1Q8TBC3 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
SHKBP1Q8TBC3 PALM-208ENST00000592155 2272 ntTSL 4 BASIC21.35■■□□□ 1.01
SHKBP1Q8TBC3 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SHKBP1Q8TBC3 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SHKBP1Q8TBC3 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SHKBP1Q8TBC3 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC21.34■■□□□ 1.01
SHKBP1Q8TBC3 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
SHKBP1Q8TBC3 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC21.34■■□□□ 1.01
SHKBP1Q8TBC3 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SHKBP1Q8TBC3 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SHKBP1Q8TBC3 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
SHKBP1Q8TBC3 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC21.34■■□□□ 1.01
SHKBP1Q8TBC3 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC21.34■■□□□ 1.01
SHKBP1Q8TBC3 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC21.34■■□□□ 1.01
SHKBP1Q8TBC3 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC21.34■■□□□ 1.01
SHKBP1Q8TBC3 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SHKBP1Q8TBC3 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SHKBP1Q8TBC3 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SHKBP1Q8TBC3 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SHKBP1Q8TBC3 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SHKBP1Q8TBC3 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SHKBP1Q8TBC3 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SHKBP1Q8TBC3 AC005229.4-201ENST00000610085 2198 ntBASIC21.34■■□□□ 1.01
SHKBP1Q8TBC3 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
SHKBP1Q8TBC3 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC21.34■■□□□ 1.01
SHKBP1Q8TBC3 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC21.34■■□□□ 1.01
SHKBP1Q8TBC3 PALM-207ENST00000590161 2137 ntTSL 4 BASIC21.34■■□□□ 1.01
SHKBP1Q8TBC3 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC21.34■■□□□ 1.01
SHKBP1Q8TBC3 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SHKBP1Q8TBC3 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
SHKBP1Q8TBC3 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC21.33■■□□□ 1.01
SHKBP1Q8TBC3 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SHKBP1Q8TBC3 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
SHKBP1Q8TBC3 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
SHKBP1Q8TBC3 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
SHKBP1Q8TBC3 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SHKBP1Q8TBC3 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC21.33■■□□□ 1.01
SHKBP1Q8TBC3 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
SHKBP1Q8TBC3 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1.01
SHKBP1Q8TBC3 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC21.33■■□□□ 1.01
SHKBP1Q8TBC3 PGM5P4-201ENST00000421970 445 ntBASIC21.33■■□□□ 1.01
SHKBP1Q8TBC3 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC21.33■■□□□ 1.01
SHKBP1Q8TBC3 AL356652.1-201ENST00000615962 565 ntBASIC21.33■■□□□ 1.01
SHKBP1Q8TBC3 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
SHKBP1Q8TBC3 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms