Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC20.43■□□□□ 0.86
HDDC3Q8N4P3 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HDDC3Q8N4P3 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HDDC3Q8N4P3 GGT1-206ENST00000404223 952 ntTSL 2 BASIC20.43■□□□□ 0.86
HDDC3Q8N4P3 SERP1-205ENST00000487153 657 ntTSL 4 BASIC20.43■□□□□ 0.86
HDDC3Q8N4P3 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC20.43■□□□□ 0.86
HDDC3Q8N4P3 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HDDC3Q8N4P3 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HDDC3Q8N4P3 AL024507.2-201ENST00000606070 2574 ntBASIC20.43■□□□□ 0.86
HDDC3Q8N4P3 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HDDC3Q8N4P3 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
HDDC3Q8N4P3 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HDDC3Q8N4P3 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HDDC3Q8N4P3 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
HDDC3Q8N4P3 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.43■□□□□ 0.86
HDDC3Q8N4P3 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
HDDC3Q8N4P3 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC20.43■□□□□ 0.86
HDDC3Q8N4P3 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HDDC3Q8N4P3 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
HDDC3Q8N4P3 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
HDDC3Q8N4P3 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC20.42■□□□□ 0.86
HDDC3Q8N4P3 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
HDDC3Q8N4P3 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
HDDC3Q8N4P3 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HDDC3Q8N4P3 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
HDDC3Q8N4P3 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
HDDC3Q8N4P3 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HDDC3Q8N4P3 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
HDDC3Q8N4P3 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC20.42■□□□□ 0.86
HDDC3Q8N4P3 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC20.42■□□□□ 0.86
HDDC3Q8N4P3 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
HDDC3Q8N4P3 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
HDDC3Q8N4P3 AC233263.1-201ENST00000578059 224 ntBASIC20.42■□□□□ 0.86
HDDC3Q8N4P3 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
HDDC3Q8N4P3 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
HDDC3Q8N4P3 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HDDC3Q8N4P3 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
HDDC3Q8N4P3 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.42■□□□□ 0.86
HDDC3Q8N4P3 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
HDDC3Q8N4P3 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
HDDC3Q8N4P3 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
HDDC3Q8N4P3 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC20.41■□□□□ 0.86
HDDC3Q8N4P3 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
HDDC3Q8N4P3 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HDDC3Q8N4P3 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
HDDC3Q8N4P3 POM121L13P-201ENST00000422362 380 ntBASIC20.41■□□□□ 0.86
HDDC3Q8N4P3 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC20.41■□□□□ 0.86
HDDC3Q8N4P3 AC010331.1-201ENST00000611423 582 ntBASIC20.41■□□□□ 0.86
HDDC3Q8N4P3 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HDDC3Q8N4P3 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HDDC3Q8N4P3 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC20.41■□□□□ 0.86
HDDC3Q8N4P3 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC20.41■□□□□ 0.86
HDDC3Q8N4P3 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HDDC3Q8N4P3 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HDDC3Q8N4P3 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
HDDC3Q8N4P3 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.41■□□□□ 0.86
HDDC3Q8N4P3 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
HDDC3Q8N4P3 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
HDDC3Q8N4P3 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC20.41■□□□□ 0.86
HDDC3Q8N4P3 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HDDC3Q8N4P3 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
HDDC3Q8N4P3 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
HDDC3Q8N4P3 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
HDDC3Q8N4P3 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
HDDC3Q8N4P3 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HDDC3Q8N4P3 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
HDDC3Q8N4P3 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.4■□□□□ 0.86
HDDC3Q8N4P3 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HDDC3Q8N4P3 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC20.4■□□□□ 0.86
HDDC3Q8N4P3 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC20.4■□□□□ 0.86
HDDC3Q8N4P3 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
HDDC3Q8N4P3 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
HDDC3Q8N4P3 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC20.4■□□□□ 0.86
HDDC3Q8N4P3 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC20.4■□□□□ 0.86
HDDC3Q8N4P3 CBFB-203ENST00000561924 584 ntTSL 5 BASIC20.4■□□□□ 0.86
HDDC3Q8N4P3 AC027702.1-201ENST00000563810 1770 ntBASIC20.4■□□□□ 0.86
HDDC3Q8N4P3 AL049796.1-201ENST00000565336 1766 ntBASIC20.4■□□□□ 0.86
HDDC3Q8N4P3 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
HDDC3Q8N4P3 AC069544.1-201ENST00000609399 999 ntBASIC20.4■□□□□ 0.86
HDDC3Q8N4P3 AC006557.6-201ENST00000623071 864 ntBASIC20.4■□□□□ 0.86
HDDC3Q8N4P3 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
HDDC3Q8N4P3 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HDDC3Q8N4P3 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HDDC3Q8N4P3 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
HDDC3Q8N4P3 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
HDDC3Q8N4P3 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.39■□□□□ 0.86
HDDC3Q8N4P3 STK25-205ENST00000405883 1904 ntTSL 2 BASIC20.39■□□□□ 0.86
HDDC3Q8N4P3 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
HDDC3Q8N4P3 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
HDDC3Q8N4P3 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.86
HDDC3Q8N4P3 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
HDDC3Q8N4P3 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC20.39■□□□□ 0.85
HDDC3Q8N4P3 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC20.39■□□□□ 0.85
HDDC3Q8N4P3 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC20.39■□□□□ 0.85
HDDC3Q8N4P3 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
HDDC3Q8N4P3 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
HDDC3Q8N4P3 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC20.39■□□□□ 0.85
HDDC3Q8N4P3 AC005829.2-201ENST00000571422 1056 ntBASIC20.39■□□□□ 0.85
HDDC3Q8N4P3 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
HDDC3Q8N4P3 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms