Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC20.17■□□□□ 0.82
ZNF549Q6P9A3 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
ZNF549Q6P9A3 USP39-204ENST00000409766 2033 ntTSL 2 BASIC20.17■□□□□ 0.82
ZNF549Q6P9A3 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
ZNF549Q6P9A3 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC20.17■□□□□ 0.82
ZNF549Q6P9A3 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
ZNF549Q6P9A3 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
ZNF549Q6P9A3 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
ZNF549Q6P9A3 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
ZNF549Q6P9A3 CASP6-205ENST00000505486 538 ntTSL 4 BASIC20.17■□□□□ 0.82
ZNF549Q6P9A3 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC20.17■□□□□ 0.82
ZNF549Q6P9A3 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC20.17■□□□□ 0.82
ZNF549Q6P9A3 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC20.17■□□□□ 0.82
ZNF549Q6P9A3 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC20.17■□□□□ 0.82
ZNF549Q6P9A3 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
ZNF549Q6P9A3 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
ZNF549Q6P9A3 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
ZNF549Q6P9A3 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.17■□□□□ 0.82
ZNF549Q6P9A3 AC099778.1-201ENST00000568593 1911 ntBASIC20.17■□□□□ 0.82
ZNF549Q6P9A3 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
ZNF549Q6P9A3 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
ZNF549Q6P9A3 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
ZNF549Q6P9A3 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
ZNF549Q6P9A3 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
ZNF549Q6P9A3 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
ZNF549Q6P9A3 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
ZNF549Q6P9A3 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC20.16■□□□□ 0.82
ZNF549Q6P9A3 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
ZNF549Q6P9A3 AC112907.3-201ENST00000577781 2400 ntBASIC20.16■□□□□ 0.82
ZNF549Q6P9A3 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
ZNF549Q6P9A3 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
ZNF549Q6P9A3 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
ZNF549Q6P9A3 AC022517.1-201ENST00000592429 346 ntBASIC20.16■□□□□ 0.82
ZNF549Q6P9A3 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC20.16■□□□□ 0.82
ZNF549Q6P9A3 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC20.16■□□□□ 0.82
ZNF549Q6P9A3 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
ZNF549Q6P9A3 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
ZNF549Q6P9A3 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
ZNF549Q6P9A3 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
ZNF549Q6P9A3 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC20.16■□□□□ 0.82
ZNF549Q6P9A3 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC20.16■□□□□ 0.82
ZNF549Q6P9A3 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
ZNF549Q6P9A3 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
ZNF549Q6P9A3 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
ZNF549Q6P9A3 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
ZNF549Q6P9A3 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.15■□□□□ 0.82
ZNF549Q6P9A3 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
ZNF549Q6P9A3 AL162412.1-201ENST00000567129 965 ntBASIC20.15■□□□□ 0.82
ZNF549Q6P9A3 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
ZNF549Q6P9A3 AC068338.2-201ENST00000563278 1430 ntBASIC20.15■□□□□ 0.82
ZNF549Q6P9A3 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
ZNF549Q6P9A3 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
ZNF549Q6P9A3 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
ZNF549Q6P9A3 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
ZNF549Q6P9A3 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC20.15■□□□□ 0.82
ZNF549Q6P9A3 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC20.15■□□□□ 0.82
ZNF549Q6P9A3 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
ZNF549Q6P9A3 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC20.15■□□□□ 0.82
ZNF549Q6P9A3 SMG8-203ENST00000578922 2178 ntBASIC20.15■□□□□ 0.82
ZNF549Q6P9A3 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
ZNF549Q6P9A3 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
ZNF549Q6P9A3 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
ZNF549Q6P9A3 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
ZNF549Q6P9A3 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
ZNF549Q6P9A3 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
ZNF549Q6P9A3 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC20.14■□□□□ 0.82
ZNF549Q6P9A3 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC20.14■□□□□ 0.81
ZNF549Q6P9A3 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC20.14■□□□□ 0.81
ZNF549Q6P9A3 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC20.14■□□□□ 0.81
ZNF549Q6P9A3 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
ZNF549Q6P9A3 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
ZNF549Q6P9A3 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC20.14■□□□□ 0.81
ZNF549Q6P9A3 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC20.14■□□□□ 0.81
ZNF549Q6P9A3 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC20.14■□□□□ 0.81
ZNF549Q6P9A3 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC20.14■□□□□ 0.81
ZNF549Q6P9A3 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC20.14■□□□□ 0.81
ZNF549Q6P9A3 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC20.14■□□□□ 0.81
ZNF549Q6P9A3 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
ZNF549Q6P9A3 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
ZNF549Q6P9A3 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
ZNF549Q6P9A3 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
ZNF549Q6P9A3 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC20.13■□□□□ 0.81
ZNF549Q6P9A3 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC20.13■□□□□ 0.81
ZNF549Q6P9A3 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.13■□□□□ 0.81
ZNF549Q6P9A3 PCDHAC2-203ENST00000615316 3011 ntBASIC20.13■□□□□ 0.81
ZNF549Q6P9A3 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
ZNF549Q6P9A3 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC20.13■□□□□ 0.81
ZNF549Q6P9A3 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
ZNF549Q6P9A3 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.13■□□□□ 0.81
ZNF549Q6P9A3 CYP21A1P-202ENST00000354927 1481 ntBASIC20.13■□□□□ 0.81
ZNF549Q6P9A3 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
ZNF549Q6P9A3 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
ZNF549Q6P9A3 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
ZNF549Q6P9A3 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC20.13■□□□□ 0.81
ZNF549Q6P9A3 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
ZNF549Q6P9A3 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
ZNF549Q6P9A3 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
ZNF549Q6P9A3 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
ZNF549Q6P9A3 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC20.13■□□□□ 0.81
ZNF549Q6P9A3 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms