Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
HSPG2P98160 AC006538.3-201ENST00000612495 578 ntBASIC12.74□□□□□ -0.37
HSPG2P98160 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
HSPG2P98160 PREB-202ENST00000406567 1910 ntTSL 5 BASIC12.74□□□□□ -0.37
HSPG2P98160 TREX2-204ENST00000370212 861 ntTSL 5 BASIC12.74□□□□□ -0.37
HSPG2P98160 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
HSPG2P98160 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
HSPG2P98160 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC12.74□□□□□ -0.37
HSPG2P98160 FAM86EP-206ENST00000510506 987 ntBASIC12.74□□□□□ -0.37
HSPG2P98160 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC12.74□□□□□ -0.37
HSPG2P98160 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
HSPG2P98160 KRT8P10-201ENST00000450021 1447 ntBASIC12.74□□□□□ -0.37
HSPG2P98160 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
HSPG2P98160 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
HSPG2P98160 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
HSPG2P98160 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
HSPG2P98160 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
HSPG2P98160 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC12.74□□□□□ -0.37
HSPG2P98160 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
HSPG2P98160 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
HSPG2P98160 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC12.74□□□□□ -0.37
HSPG2P98160 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC12.74□□□□□ -0.37
HSPG2P98160 AC116050.2-201ENST00000612102 1779 ntBASIC12.74□□□□□ -0.37
HSPG2P98160 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
HSPG2P98160 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC12.74□□□□□ -0.37
HSPG2P98160 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC12.74□□□□□ -0.37
HSPG2P98160 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC12.74□□□□□ -0.37
HSPG2P98160 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC12.74□□□□□ -0.37
HSPG2P98160 AC005332.1-201ENST00000577698 1310 ntBASIC12.73□□□□□ -0.37
HSPG2P98160 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HSPG2P98160 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC12.73□□□□□ -0.37
HSPG2P98160 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
HSPG2P98160 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC12.73□□□□□ -0.37
HSPG2P98160 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HSPG2P98160 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC12.73□□□□□ -0.37
HSPG2P98160 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HSPG2P98160 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC12.73□□□□□ -0.37
HSPG2P98160 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
HSPG2P98160 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC12.73□□□□□ -0.37
HSPG2P98160 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HSPG2P98160 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC12.73□□□□□ -0.37
HSPG2P98160 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC12.73□□□□□ -0.37
HSPG2P98160 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC12.73□□□□□ -0.37
HSPG2P98160 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC12.73□□□□□ -0.37
HSPG2P98160 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
HSPG2P98160 NIFKP9-201ENST00000419265 221 ntBASIC12.72□□□□□ -0.37
HSPG2P98160 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC12.72□□□□□ -0.37
HSPG2P98160 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC12.72□□□□□ -0.37
HSPG2P98160 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
HSPG2P98160 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
HSPG2P98160 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC12.72□□□□□ -0.37
HSPG2P98160 AC246785.2-201ENST00000432512 513 ntBASIC12.72□□□□□ -0.37
HSPG2P98160 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC12.72□□□□□ -0.37
HSPG2P98160 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC12.72□□□□□ -0.37
HSPG2P98160 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC12.72□□□□□ -0.37
HSPG2P98160 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC12.72□□□□□ -0.37
HSPG2P98160 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
HSPG2P98160 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
HSPG2P98160 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC12.72□□□□□ -0.37
HSPG2P98160 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
HSPG2P98160 AC010542.4-201ENST00000563151 1910 ntBASIC12.72□□□□□ -0.37
HSPG2P98160 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
HSPG2P98160 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
HSPG2P98160 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
HSPG2P98160 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
HSPG2P98160 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
HSPG2P98160 NDUFV2-AS1-203ENST00000608008 779 ntBASIC12.72□□□□□ -0.37
HSPG2P98160 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
HSPG2P98160 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
HSPG2P98160 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC12.71□□□□□ -0.37
HSPG2P98160 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
HSPG2P98160 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC12.71□□□□□ -0.37
HSPG2P98160 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC12.71□□□□□ -0.37
HSPG2P98160 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
HSPG2P98160 AL121906.2-201ENST00000621597 723 ntBASIC12.71□□□□□ -0.37
HSPG2P98160 AL121956.5-201ENST00000625261 221 ntBASIC12.71□□□□□ -0.37
HSPG2P98160 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC12.71□□□□□ -0.37
HSPG2P98160 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC12.71□□□□□ -0.37
HSPG2P98160 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
HSPG2P98160 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
HSPG2P98160 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
HSPG2P98160 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HSPG2P98160 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC12.7□□□□□ -0.38
HSPG2P98160 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HSPG2P98160 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HSPG2P98160 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC12.7□□□□□ -0.38
HSPG2P98160 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC12.7□□□□□ -0.38
HSPG2P98160 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC12.7□□□□□ -0.38
HSPG2P98160 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC12.7□□□□□ -0.38
HSPG2P98160 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
HSPG2P98160 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC12.7□□□□□ -0.38
HSPG2P98160 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
HSPG2P98160 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
HSPG2P98160 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
HSPG2P98160 PPP1R14BP5-201ENST00000440334 435 ntBASIC12.7□□□□□ -0.38
HSPG2P98160 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC12.7□□□□□ -0.38
HSPG2P98160 PTK2-216ENST00000519881 863 ntTSL 3 BASIC12.7□□□□□ -0.38
HSPG2P98160 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
HSPG2P98160 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC12.7□□□□□ -0.38
HSPG2P98160 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms