Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HDAC4P56524 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC21.23■□□□□ 0.99
HDAC4P56524 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC21.23■□□□□ 0.99
HDAC4P56524 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC21.23■□□□□ 0.99
HDAC4P56524 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
HDAC4P56524 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC21.23■□□□□ 0.99
HDAC4P56524 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
HDAC4P56524 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC21.23■□□□□ 0.99
HDAC4P56524 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
HDAC4P56524 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC21.23■□□□□ 0.99
HDAC4P56524 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HDAC4P56524 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
HDAC4P56524 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC21.23■□□□□ 0.99
HDAC4P56524 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
HDAC4P56524 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC21.22■□□□□ 0.99
HDAC4P56524 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
HDAC4P56524 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
HDAC4P56524 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
HDAC4P56524 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
HDAC4P56524 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC21.22■□□□□ 0.99
HDAC4P56524 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
HDAC4P56524 LINC01521-201ENST00000504184 1943 ntBASIC21.22■□□□□ 0.99
HDAC4P56524 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
HDAC4P56524 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
HDAC4P56524 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC21.22■□□□□ 0.99
HDAC4P56524 MCRIP2P1-201ENST00000394346 511 ntBASIC21.22■□□□□ 0.99
HDAC4P56524 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
HDAC4P56524 AC133552.2-202ENST00000575694 574 ntBASIC21.22■□□□□ 0.99
HDAC4P56524 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC21.22■□□□□ 0.99
HDAC4P56524 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
HDAC4P56524 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC21.22■□□□□ 0.99
HDAC4P56524 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
HDAC4P56524 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
HDAC4P56524 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
HDAC4P56524 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
HDAC4P56524 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
HDAC4P56524 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC21.22■□□□□ 0.99
HDAC4P56524 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
HDAC4P56524 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC21.22■□□□□ 0.99
HDAC4P56524 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
HDAC4P56524 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HDAC4P56524 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
HDAC4P56524 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HDAC4P56524 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HDAC4P56524 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HDAC4P56524 DET1-207ENST00000564406 2315 ntTSL 2 BASIC21.21■□□□□ 0.99
HDAC4P56524 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC21.21■□□□□ 0.99
HDAC4P56524 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
HDAC4P56524 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC21.21■□□□□ 0.99
HDAC4P56524 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC21.21■□□□□ 0.99
HDAC4P56524 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC21.21■□□□□ 0.99
HDAC4P56524 AL356652.1-201ENST00000615962 565 ntBASIC21.21■□□□□ 0.99
HDAC4P56524 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC21.21■□□□□ 0.99
HDAC4P56524 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
HDAC4P56524 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HDAC4P56524 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
HDAC4P56524 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HDAC4P56524 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC21.21■□□□□ 0.99
HDAC4P56524 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC21.21■□□□□ 0.99
HDAC4P56524 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC21.21■□□□□ 0.99
HDAC4P56524 AC010980.2-201ENST00000587099 1412 ntBASIC21.21■□□□□ 0.99
HDAC4P56524 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
HDAC4P56524 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC21.2■□□□□ 0.98
HDAC4P56524 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HDAC4P56524 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HDAC4P56524 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
HDAC4P56524 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HDAC4P56524 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
HDAC4P56524 AL512625.2-201ENST00000417533 625 ntBASIC21.2■□□□□ 0.98
HDAC4P56524 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC21.2■□□□□ 0.98
HDAC4P56524 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
HDAC4P56524 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC21.2■□□□□ 0.98
HDAC4P56524 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
HDAC4P56524 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HDAC4P56524 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HDAC4P56524 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
HDAC4P56524 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC21.2■□□□□ 0.98
HDAC4P56524 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
HDAC4P56524 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HDAC4P56524 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HDAC4P56524 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
HDAC4P56524 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
HDAC4P56524 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
HDAC4P56524 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HDAC4P56524 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
HDAC4P56524 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
HDAC4P56524 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HDAC4P56524 AC092720.2-201ENST00000602388 1665 ntBASIC21.19■□□□□ 0.98
HDAC4P56524 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HDAC4P56524 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HDAC4P56524 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC21.19■□□□□ 0.98
HDAC4P56524 AL355472.2-201ENST00000422958 438 ntBASIC21.19■□□□□ 0.98
HDAC4P56524 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HDAC4P56524 CYP2T3P-201ENST00000601990 817 ntBASIC21.19■□□□□ 0.98
HDAC4P56524 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
HDAC4P56524 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC21.19■□□□□ 0.98
HDAC4P56524 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
HDAC4P56524 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HDAC4P56524 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
HDAC4P56524 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms