Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LIM2P55344 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
LIM2P55344 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
LIM2P55344 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIM2P55344 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
LIM2P55344 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
LIM2P55344 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LIM2P55344 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
LIM2P55344 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC19.29■□□□□ 0.68
LIM2P55344 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIM2P55344 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC19.29■□□□□ 0.68
LIM2P55344 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LIM2P55344 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIM2P55344 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC19.29■□□□□ 0.68
LIM2P55344 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIM2P55344 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIM2P55344 GPX1P1-201ENST00000388829 606 ntBASIC19.29■□□□□ 0.68
LIM2P55344 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LIM2P55344 PGM5P4-201ENST00000421970 445 ntBASIC19.29■□□□□ 0.68
LIM2P55344 AL355472.2-201ENST00000422958 438 ntBASIC19.29■□□□□ 0.68
LIM2P55344 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC19.29■□□□□ 0.68
LIM2P55344 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIM2P55344 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC19.29■□□□□ 0.68
LIM2P55344 CYP2T3P-201ENST00000601990 817 ntBASIC19.29■□□□□ 0.68
LIM2P55344 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIM2P55344 AP005212.1-201ENST00000581547 1997 ntBASIC19.29■□□□□ 0.68
LIM2P55344 MKRN4P-201ENST00000444706 1521 ntBASIC19.29■□□□□ 0.68
LIM2P55344 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIM2P55344 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC19.29■□□□□ 0.68
LIM2P55344 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
LIM2P55344 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
LIM2P55344 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIM2P55344 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIM2P55344 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LIM2P55344 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIM2P55344 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC19.28■□□□□ 0.68
LIM2P55344 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIM2P55344 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIM2P55344 PHB2-213ENST00000546111 858 ntTSL 2 BASIC19.28■□□□□ 0.68
LIM2P55344 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC19.28■□□□□ 0.68
LIM2P55344 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LIM2P55344 MARS-234ENST00000630571 216 ntTSL 5 BASIC19.28■□□□□ 0.68
LIM2P55344 MARS-235ENST00000630803 183 ntTSL 3 BASIC19.28■□□□□ 0.68
LIM2P55344 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LIM2P55344 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIM2P55344 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIM2P55344 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIM2P55344 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.28■□□□□ 0.68
LIM2P55344 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIM2P55344 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIM2P55344 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC19.27■□□□□ 0.68
LIM2P55344 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
LIM2P55344 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIM2P55344 KRT8P36-201ENST00000489121 1440 ntBASIC19.27■□□□□ 0.68
LIM2P55344 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC19.27■□□□□ 0.68
LIM2P55344 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC19.27■□□□□ 0.68
LIM2P55344 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC19.27■□□□□ 0.68
LIM2P55344 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIM2P55344 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LIM2P55344 KRT18P68-201ENST00000392293 1000 ntBASIC19.27■□□□□ 0.68
LIM2P55344 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC19.27■□□□□ 0.68
LIM2P55344 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC19.27■□□□□ 0.68
LIM2P55344 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC19.27■□□□□ 0.68
LIM2P55344 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC19.27■□□□□ 0.68
LIM2P55344 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC19.27■□□□□ 0.68
LIM2P55344 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC19.27■□□□□ 0.68
LIM2P55344 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC19.27■□□□□ 0.68
LIM2P55344 AL356652.1-201ENST00000615962 565 ntBASIC19.27■□□□□ 0.68
LIM2P55344 GCK-205ENST00000437084 1385 ntTSL 5 BASIC19.27■□□□□ 0.68
LIM2P55344 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
LIM2P55344 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
LIM2P55344 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC19.26■□□□□ 0.67
LIM2P55344 GABARAPL3-202ENST00000624044 1851 ntBASIC19.26■□□□□ 0.67
LIM2P55344 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC19.26■□□□□ 0.67
LIM2P55344 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC19.26■□□□□ 0.67
LIM2P55344 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIM2P55344 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIM2P55344 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
LIM2P55344 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIM2P55344 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
LIM2P55344 GUSBP6-202ENST00000438529 1198 ntBASIC19.26■□□□□ 0.67
LIM2P55344 TSPY6P-201ENST00000448518 926 ntBASIC19.26■□□□□ 0.67
LIM2P55344 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
LIM2P55344 ISCU-212ENST00000547005 795 ntTSL 3 BASIC19.26■□□□□ 0.67
LIM2P55344 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC19.26■□□□□ 0.67
LIM2P55344 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIM2P55344 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIM2P55344 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIM2P55344 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIM2P55344 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC19.26■□□□□ 0.67
LIM2P55344 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.26■□□□□ 0.67
LIM2P55344 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIM2P55344 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIM2P55344 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
LIM2P55344 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LIM2P55344 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIM2P55344 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LIM2P55344 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIM2P55344 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
LIM2P55344 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms