Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC18.57■□□□□ 0.56
CDH11P55287 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CDH11P55287 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC18.57■□□□□ 0.56
CDH11P55287 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC18.57■□□□□ 0.56
CDH11P55287 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CDH11P55287 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC18.57■□□□□ 0.56
CDH11P55287 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CDH11P55287 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CDH11P55287 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC18.56■□□□□ 0.56
CDH11P55287 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.56■□□□□ 0.56
CDH11P55287 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC18.56■□□□□ 0.56
CDH11P55287 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CDH11P55287 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CDH11P55287 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CDH11P55287 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CDH11P55287 HSCB-202ENST00000398941 955 ntTSL 2 BASIC18.56■□□□□ 0.56
CDH11P55287 AC006015.1-201ENST00000429970 570 ntBASIC18.56■□□□□ 0.56
CDH11P55287 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CDH11P55287 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC18.56■□□□□ 0.56
CDH11P55287 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC18.56■□□□□ 0.56
CDH11P55287 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CDH11P55287 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC18.56■□□□□ 0.56
CDH11P55287 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
CDH11P55287 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CDH11P55287 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CDH11P55287 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CDH11P55287 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CDH11P55287 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CDH11P55287 BID-204ENST00000399767 2129 ntTSL 2 BASIC18.55■□□□□ 0.56
CDH11P55287 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
CDH11P55287 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CDH11P55287 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC18.55■□□□□ 0.56
CDH11P55287 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CDH11P55287 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CDH11P55287 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC18.55■□□□□ 0.56
CDH11P55287 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CDH11P55287 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CDH11P55287 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC18.55■□□□□ 0.56
CDH11P55287 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CDH11P55287 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CDH11P55287 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CDH11P55287 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
CDH11P55287 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CDH11P55287 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CDH11P55287 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC18.54■□□□□ 0.56
CDH11P55287 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC18.54■□□□□ 0.56
CDH11P55287 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
CDH11P55287 KRT87P-202ENST00000534226 1464 ntBASIC18.54■□□□□ 0.56
CDH11P55287 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CDH11P55287 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
CDH11P55287 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
CDH11P55287 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
CDH11P55287 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CDH11P55287 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC18.54■□□□□ 0.56
CDH11P55287 RNF146-206ENST00000480444 843 ntTSL 2 BASIC18.54■□□□□ 0.56
CDH11P55287 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC18.54■□□□□ 0.56
CDH11P55287 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CDH11P55287 AC080038.1-201ENST00000611274 1154 ntBASIC18.54■□□□□ 0.56
CDH11P55287 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC18.54■□□□□ 0.56
CDH11P55287 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CDH11P55287 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
CDH11P55287 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
CDH11P55287 AC099778.1-201ENST00000568593 1911 ntBASIC18.54■□□□□ 0.56
CDH11P55287 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC18.54■□□□□ 0.56
CDH11P55287 GAS2L1P2-201ENST00000436355 1356 ntBASIC18.54■□□□□ 0.56
CDH11P55287 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC18.54■□□□□ 0.56
CDH11P55287 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CDH11P55287 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
CDH11P55287 EXOC3-AS1-202ENST00000623673 1663 ntBASIC18.54■□□□□ 0.56
CDH11P55287 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC18.53■□□□□ 0.56
CDH11P55287 AC011484.1-201ENST00000377652 1995 ntBASIC18.53■□□□□ 0.56
CDH11P55287 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CDH11P55287 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CDH11P55287 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC18.53■□□□□ 0.56
CDH11P55287 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
CDH11P55287 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC18.53■□□□□ 0.56
CDH11P55287 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC18.53■□□□□ 0.56
CDH11P55287 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC18.53■□□□□ 0.56
CDH11P55287 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CDH11P55287 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC18.53■□□□□ 0.56
CDH11P55287 BID-214ENST00000617586 542 ntTSL 5 BASIC18.53■□□□□ 0.56
CDH11P55287 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
CDH11P55287 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.53■□□□□ 0.56
CDH11P55287 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
CDH11P55287 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC18.53■□□□□ 0.56
CDH11P55287 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
CDH11P55287 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CDH11P55287 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC18.52■□□□□ 0.56
CDH11P55287 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CDH11P55287 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CDH11P55287 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CDH11P55287 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
CDH11P55287 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CDH11P55287 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CDH11P55287 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
CDH11P55287 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
CDH11P55287 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CDH11P55287 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
CDH11P55287 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
CDH11P55287 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 70.1 ms