Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC19.67■□□□□ 0.74
HNF4AP41235 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC19.67■□□□□ 0.74
HNF4AP41235 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HNF4AP41235 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
HNF4AP41235 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC19.67■□□□□ 0.74
HNF4AP41235 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC19.67■□□□□ 0.74
HNF4AP41235 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HNF4AP41235 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
HNF4AP41235 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
HNF4AP41235 DET1-207ENST00000564406 2315 ntTSL 2 BASIC19.67■□□□□ 0.74
HNF4AP41235 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HNF4AP41235 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC19.66■□□□□ 0.74
HNF4AP41235 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.66■□□□□ 0.74
HNF4AP41235 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
HNF4AP41235 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HNF4AP41235 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HNF4AP41235 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HNF4AP41235 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
HNF4AP41235 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HNF4AP41235 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HNF4AP41235 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HNF4AP41235 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
HNF4AP41235 CDCA4P2-201ENST00000441182 718 ntBASIC19.66■□□□□ 0.74
HNF4AP41235 PBX1-209ENST00000485769 834 ntTSL 2 BASIC19.66■□□□□ 0.74
HNF4AP41235 PLLP-204ENST00000569059 665 ntTSL 3 BASIC19.66■□□□□ 0.74
HNF4AP41235 MDK-213ENST00000617138 635 ntTSL 2 BASIC19.66■□□□□ 0.74
HNF4AP41235 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.66■□□□□ 0.74
HNF4AP41235 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC19.66■□□□□ 0.74
HNF4AP41235 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19.66■□□□□ 0.74
HNF4AP41235 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
HNF4AP41235 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HNF4AP41235 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HNF4AP41235 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HNF4AP41235 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC19.66■□□□□ 0.74
HNF4AP41235 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC19.66■□□□□ 0.74
HNF4AP41235 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HNF4AP41235 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC19.65■□□□□ 0.74
HNF4AP41235 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.65■□□□□ 0.74
HNF4AP41235 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC19.65■□□□□ 0.74
HNF4AP41235 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC19.65■□□□□ 0.74
HNF4AP41235 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HNF4AP41235 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HNF4AP41235 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HNF4AP41235 METTL26-203ENST00000397664 604 ntTSL 2 BASIC19.65■□□□□ 0.74
HNF4AP41235 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HNF4AP41235 AC231657.2-201ENST00000624556 255 ntBASIC19.65■□□□□ 0.74
HNF4AP41235 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HNF4AP41235 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC19.65■□□□□ 0.74
HNF4AP41235 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC19.65■□□□□ 0.74
HNF4AP41235 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HNF4AP41235 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
HNF4AP41235 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HNF4AP41235 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
HNF4AP41235 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HNF4AP41235 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HNF4AP41235 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
HNF4AP41235 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC19.64■□□□□ 0.74
HNF4AP41235 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
HNF4AP41235 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC19.64■□□□□ 0.73
HNF4AP41235 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HNF4AP41235 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC19.64■□□□□ 0.73
HNF4AP41235 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HNF4AP41235 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
HNF4AP41235 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
HNF4AP41235 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC19.64■□□□□ 0.73
HNF4AP41235 PGM5P4-201ENST00000421970 445 ntBASIC19.64■□□□□ 0.73
HNF4AP41235 VMO1-204ENST00000441199 741 ntTSL 2 BASIC19.64■□□□□ 0.73
HNF4AP41235 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HNF4AP41235 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC19.64■□□□□ 0.73
HNF4AP41235 AC016405.3-201ENST00000607710 860 ntBASIC19.64■□□□□ 0.73
HNF4AP41235 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HNF4AP41235 KRT8P36-201ENST00000489121 1440 ntBASIC19.64■□□□□ 0.73
HNF4AP41235 AC068338.2-201ENST00000563278 1430 ntBASIC19.64■□□□□ 0.73
HNF4AP41235 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC19.64■□□□□ 0.73
HNF4AP41235 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC19.64■□□□□ 0.73
HNF4AP41235 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
HNF4AP41235 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HNF4AP41235 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
HNF4AP41235 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.64■□□□□ 0.73
HNF4AP41235 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
HNF4AP41235 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HNF4AP41235 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC19.64■□□□□ 0.73
HNF4AP41235 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HNF4AP41235 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HNF4AP41235 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
HNF4AP41235 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.64■□□□□ 0.73
HNF4AP41235 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HNF4AP41235 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HNF4AP41235 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HNF4AP41235 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
HNF4AP41235 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
HNF4AP41235 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
HNF4AP41235 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.63■□□□□ 0.73
HNF4AP41235 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
HNF4AP41235 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HNF4AP41235 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HNF4AP41235 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.63■□□□□ 0.73
HNF4AP41235 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HNF4AP41235 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC19.63■□□□□ 0.73
HNF4AP41235 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms