Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC133561.4-201ENST00000566112 224 ntBASIC19.36■□□□□ 0.69
MSX2P35548 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC19.36■□□□□ 0.69
MSX2P35548 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
MSX2P35548 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
MSX2P35548 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC19.36■□□□□ 0.69
MSX2P35548 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
MSX2P35548 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.35■□□□□ 0.69
MSX2P35548 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MSX2P35548 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MSX2P35548 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MSX2P35548 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
MSX2P35548 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MSX2P35548 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC19.35■□□□□ 0.69
MSX2P35548 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
MSX2P35548 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC19.35■□□□□ 0.69
MSX2P35548 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MSX2P35548 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MSX2P35548 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
MSX2P35548 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC19.35■□□□□ 0.69
MSX2P35548 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
MSX2P35548 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
MSX2P35548 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC19.34■□□□□ 0.69
MSX2P35548 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
MSX2P35548 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
MSX2P35548 AC005332.7-201ENST00000614046 2005 ntBASIC19.34■□□□□ 0.69
MSX2P35548 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
MSX2P35548 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
MSX2P35548 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC19.34■□□□□ 0.69
MSX2P35548 DUX4L19-201ENST00000557448 1267 ntBASIC19.34■□□□□ 0.69
MSX2P35548 MIR4466-201ENST00000606121 54 ntBASIC19.34■□□□□ 0.69
MSX2P35548 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
MSX2P35548 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
MSX2P35548 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
MSX2P35548 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
MSX2P35548 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.34■□□□□ 0.69
MSX2P35548 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
MSX2P35548 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
MSX2P35548 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
MSX2P35548 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
MSX2P35548 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
MSX2P35548 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
MSX2P35548 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
MSX2P35548 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
MSX2P35548 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
MSX2P35548 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC19.33■□□□□ 0.68
MSX2P35548 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
MSX2P35548 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC19.33■□□□□ 0.68
MSX2P35548 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
MSX2P35548 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
MSX2P35548 AC005224.4-201ENST00000583262 1652 ntBASIC19.33■□□□□ 0.68
MSX2P35548 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC19.33■□□□□ 0.68
MSX2P35548 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC19.33■□□□□ 0.68
MSX2P35548 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC19.32■□□□□ 0.68
MSX2P35548 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
MSX2P35548 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
MSX2P35548 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
MSX2P35548 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.32■□□□□ 0.68
MSX2P35548 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
MSX2P35548 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
MSX2P35548 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
MSX2P35548 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC19.32■□□□□ 0.68
MSX2P35548 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC19.32■□□□□ 0.68
MSX2P35548 SRR-208ENST00000576848 588 ntTSL 4 BASIC19.32■□□□□ 0.68
MSX2P35548 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC19.32■□□□□ 0.68
MSX2P35548 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
MSX2P35548 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
MSX2P35548 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC19.32■□□□□ 0.68
MSX2P35548 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
MSX2P35548 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
MSX2P35548 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
MSX2P35548 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC19.32■□□□□ 0.68
MSX2P35548 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC19.32■□□□□ 0.68
MSX2P35548 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
MSX2P35548 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
MSX2P35548 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
MSX2P35548 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC19.32■□□□□ 0.68
MSX2P35548 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
MSX2P35548 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
MSX2P35548 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC19.31■□□□□ 0.68
MSX2P35548 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
MSX2P35548 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC19.31■□□□□ 0.68
MSX2P35548 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
MSX2P35548 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC19.31■□□□□ 0.68
MSX2P35548 POLI-202ENST00000406285 2030 ntTSL 2 BASIC19.31■□□□□ 0.68
MSX2P35548 AL691432.2-201ENST00000607222 2038 ntBASIC19.31■□□□□ 0.68
MSX2P35548 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
MSX2P35548 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.31■□□□□ 0.68
MSX2P35548 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
MSX2P35548 FXN-202ENST00000396364 980 ntTSL 5 BASIC19.31■□□□□ 0.68
MSX2P35548 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC19.31■□□□□ 0.68
MSX2P35548 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC19.31■□□□□ 0.68
MSX2P35548 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
MSX2P35548 AC093484.2-201ENST00000580996 2166 ntBASIC19.31■□□□□ 0.68
MSX2P35548 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
MSX2P35548 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
MSX2P35548 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
MSX2P35548 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
MSX2P35548 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC19.31■□□□□ 0.68
MSX2P35548 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC19.31■□□□□ 0.68
MSX2P35548 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms