Protein–RNA interactions for Protein: P18848

ATF4, Cyclic AMP-dependent transcription factor ATF-4, humanhuman

Predicted RBP Predictions only

Length 351 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATF4P18848 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC16.92■□□□□ 0.3
ATF4P18848 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
ATF4P18848 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ATF4P18848 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
ATF4P18848 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC16.91■□□□□ 0.3
ATF4P18848 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
ATF4P18848 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ATF4P18848 AC008406.3-201ENST00000620001 1374 ntBASIC16.91■□□□□ 0.3
ATF4P18848 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
ATF4P18848 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ATF4P18848 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC16.91■□□□□ 0.3
ATF4P18848 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC16.91■□□□□ 0.3
ATF4P18848 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
ATF4P18848 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ATF4P18848 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
ATF4P18848 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
ATF4P18848 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC16.91■□□□□ 0.3
ATF4P18848 MIR6722-201ENST00000617286 78 ntBASIC16.91■□□□□ 0.3
ATF4P18848 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ATF4P18848 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ATF4P18848 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ATF4P18848 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ATF4P18848 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ATF4P18848 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC16.91■□□□□ 0.3
ATF4P18848 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ATF4P18848 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
ATF4P18848 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ATF4P18848 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ATF4P18848 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ATF4P18848 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
ATF4P18848 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC16.9■□□□□ 0.3
ATF4P18848 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ATF4P18848 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
ATF4P18848 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC16.9■□□□□ 0.3
ATF4P18848 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC16.9■□□□□ 0.3
ATF4P18848 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ATF4P18848 AC104581.1-202ENST00000635932 2618 ntBASIC16.9■□□□□ 0.3
ATF4P18848 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ATF4P18848 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ATF4P18848 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
ATF4P18848 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ATF4P18848 LINC01529-204ENST00000636474 1715 ntBASIC16.9■□□□□ 0.3
ATF4P18848 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC16.9■□□□□ 0.3
ATF4P18848 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.3
ATF4P18848 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
ATF4P18848 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
ATF4P18848 PKD1P1-201ENST00000458669 6805 ntBASIC16.89■□□□□ 0.29
ATF4P18848 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC16.89■□□□□ 0.29
ATF4P18848 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC16.89■□□□□ 0.29
ATF4P18848 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ATF4P18848 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC16.89■□□□□ 0.29
ATF4P18848 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ATF4P18848 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
ATF4P18848 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ATF4P18848 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ATF4P18848 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ATF4P18848 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC16.89■□□□□ 0.29
ATF4P18848 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ATF4P18848 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC16.89■□□□□ 0.29
ATF4P18848 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
ATF4P18848 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC16.89■□□□□ 0.29
ATF4P18848 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ATF4P18848 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
ATF4P18848 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC16.89■□□□□ 0.29
ATF4P18848 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
ATF4P18848 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ATF4P18848 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ATF4P18848 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ATF4P18848 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ATF4P18848 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
ATF4P18848 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC16.88■□□□□ 0.29
ATF4P18848 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
ATF4P18848 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ATF4P18848 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
ATF4P18848 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
ATF4P18848 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
ATF4P18848 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
ATF4P18848 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC16.88■□□□□ 0.29
ATF4P18848 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ATF4P18848 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
ATF4P18848 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC16.88■□□□□ 0.29
ATF4P18848 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
ATF4P18848 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC16.88■□□□□ 0.29
ATF4P18848 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ATF4P18848 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC16.88■□□□□ 0.29
ATF4P18848 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC16.88■□□□□ 0.29
ATF4P18848 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
ATF4P18848 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ATF4P18848 FER1L4-210ENST00000615531 5998 ntBASIC16.88■□□□□ 0.29
ATF4P18848 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
ATF4P18848 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
ATF4P18848 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
ATF4P18848 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
ATF4P18848 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ATF4P18848 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC16.87■□□□□ 0.29
ATF4P18848 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
ATF4P18848 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ATF4P18848 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC16.87■□□□□ 0.29
ATF4P18848 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
ATF4P18848 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms