Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL6A2P12110 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL6A2P12110 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL6A2P12110 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL6A2P12110 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
COL6A2P12110 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC20.05■□□□□ 0.8
COL6A2P12110 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
COL6A2P12110 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL6A2P12110 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL6A2P12110 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL6A2P12110 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC20.05■□□□□ 0.8
COL6A2P12110 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL6A2P12110 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL6A2P12110 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL6A2P12110 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC20.05■□□□□ 0.8
COL6A2P12110 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC20.05■□□□□ 0.8
COL6A2P12110 AC019069.1-201ENST00000610008 1333 ntBASIC20.04■□□□□ 0.8
COL6A2P12110 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL6A2P12110 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL6A2P12110 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC20.04■□□□□ 0.8
COL6A2P12110 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC20.04■□□□□ 0.8
COL6A2P12110 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
COL6A2P12110 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC20.04■□□□□ 0.8
COL6A2P12110 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC20.04■□□□□ 0.8
COL6A2P12110 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC20.04■□□□□ 0.8
COL6A2P12110 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC20.04■□□□□ 0.8
COL6A2P12110 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL6A2P12110 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC20.04■□□□□ 0.8
COL6A2P12110 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL6A2P12110 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL6A2P12110 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC20.04■□□□□ 0.8
COL6A2P12110 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC20.04■□□□□ 0.8
COL6A2P12110 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL6A2P12110 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
COL6A2P12110 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL6A2P12110 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL6A2P12110 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC20.03■□□□□ 0.8
COL6A2P12110 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL6A2P12110 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL6A2P12110 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
COL6A2P12110 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL6A2P12110 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL6A2P12110 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL6A2P12110 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL6A2P12110 CDV3P1-201ENST00000471403 739 ntBASIC20.03■□□□□ 0.8
COL6A2P12110 KRT18P14-201ENST00000534205 1250 ntBASIC20.03■□□□□ 0.8
COL6A2P12110 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL6A2P12110 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC20.03■□□□□ 0.8
COL6A2P12110 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL6A2P12110 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC20.03■□□□□ 0.8
COL6A2P12110 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
COL6A2P12110 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC20.02■□□□□ 0.8
COL6A2P12110 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC20.02■□□□□ 0.8
COL6A2P12110 AC004854.2-201ENST00000608450 1441 ntBASIC20.02■□□□□ 0.8
COL6A2P12110 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC20.02■□□□□ 0.8
COL6A2P12110 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC20.02■□□□□ 0.8
COL6A2P12110 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC20.02■□□□□ 0.8
COL6A2P12110 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL6A2P12110 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL6A2P12110 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC20.02■□□□□ 0.8
COL6A2P12110 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL6A2P12110 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL6A2P12110 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
COL6A2P12110 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
COL6A2P12110 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC20.02■□□□□ 0.8
COL6A2P12110 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
COL6A2P12110 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
COL6A2P12110 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC20.02■□□□□ 0.8
COL6A2P12110 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
COL6A2P12110 RAB43-208ENST00000615093 783 ntTSL 5 BASIC20.02■□□□□ 0.8
COL6A2P12110 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
COL6A2P12110 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
COL6A2P12110 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
COL6A2P12110 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC20.02■□□□□ 0.79
COL6A2P12110 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.79
COL6A2P12110 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.79
COL6A2P12110 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
COL6A2P12110 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC20.01■□□□□ 0.79
COL6A2P12110 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC20.01■□□□□ 0.79
COL6A2P12110 DPP3P2-201ENST00000416030 1696 ntBASIC20.01■□□□□ 0.79
COL6A2P12110 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC20.01■□□□□ 0.79
COL6A2P12110 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL6A2P12110 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL6A2P12110 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC20.01■□□□□ 0.79
COL6A2P12110 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL6A2P12110 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC20.01■□□□□ 0.79
COL6A2P12110 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL6A2P12110 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL6A2P12110 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC20.01■□□□□ 0.79
COL6A2P12110 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL6A2P12110 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC20.01■□□□□ 0.79
COL6A2P12110 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
COL6A2P12110 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL6A2P12110 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL6A2P12110 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL6A2P12110 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL6A2P12110 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
COL6A2P12110 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC20■□□□□ 0.79
COL6A2P12110 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL6A2P12110 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 80.3 ms