Protein–RNA interactions for Protein: P08572

COL4A2, Collagen alpha-2(IV) chain, humanhuman

Predictions only

Length 1,712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2P08572 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC20.68■□□□□ 0.9
COL4A2P08572 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A2P08572 RPS15-203ENST00000586096 570 ntTSL 2 BASIC20.68■□□□□ 0.9
COL4A2P08572 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A2P08572 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A2P08572 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
COL4A2P08572 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A2P08572 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC20.68■□□□□ 0.9
COL4A2P08572 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A2P08572 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A2P08572 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC20.68■□□□□ 0.9
COL4A2P08572 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A2P08572 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.68■□□□□ 0.9
COL4A2P08572 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.68■□□□□ 0.9
COL4A2P08572 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
COL4A2P08572 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
COL4A2P08572 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC20.67■□□□□ 0.9
COL4A2P08572 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.67■□□□□ 0.9
COL4A2P08572 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
COL4A2P08572 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A2P08572 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC20.67■□□□□ 0.9
COL4A2P08572 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A2P08572 AC023632.3-201ENST00000521633 145 ntBASIC20.67■□□□□ 0.9
COL4A2P08572 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC20.67■□□□□ 0.9
COL4A2P08572 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC20.67■□□□□ 0.9
COL4A2P08572 REXO1L10P-201ENST00000615707 1290 ntBASIC20.67■□□□□ 0.9
COL4A2P08572 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC20.67■□□□□ 0.9
COL4A2P08572 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A2P08572 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A2P08572 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A2P08572 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A2P08572 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A2P08572 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A2P08572 TMPOP1-202ENST00000424642 1267 ntBASIC20.67■□□□□ 0.9
COL4A2P08572 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC20.67■□□□□ 0.9
COL4A2P08572 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A2P08572 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A2P08572 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
COL4A2P08572 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC20.66■□□□□ 0.9
COL4A2P08572 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A2P08572 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A2P08572 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A2P08572 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC20.66■□□□□ 0.9
COL4A2P08572 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC20.66■□□□□ 0.9
COL4A2P08572 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A2P08572 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC20.66■□□□□ 0.9
COL4A2P08572 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
COL4A2P08572 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A2P08572 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A2P08572 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A2P08572 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL4A2P08572 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC20.65■□□□□ 0.9
COL4A2P08572 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL4A2P08572 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
COL4A2P08572 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL4A2P08572 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC20.65■□□□□ 0.9
COL4A2P08572 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL4A2P08572 SAPCD2P4-201ENST00000424595 1171 ntBASIC20.65■□□□□ 0.9
COL4A2P08572 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC20.65■□□□□ 0.9
COL4A2P08572 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
COL4A2P08572 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC20.65■□□□□ 0.9
COL4A2P08572 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL4A2P08572 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL4A2P08572 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
COL4A2P08572 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
COL4A2P08572 PTBP1P-201ENST00000554374 1601 ntBASIC20.65■□□□□ 0.9
COL4A2P08572 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
COL4A2P08572 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL4A2P08572 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
COL4A2P08572 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
COL4A2P08572 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC20.64■□□□□ 0.9
COL4A2P08572 FDX2-207ENST00000494368 584 ntTSL 4 BASIC20.64■□□□□ 0.9
COL4A2P08572 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC20.64■□□□□ 0.9
COL4A2P08572 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
COL4A2P08572 NBPF21P-201ENST00000425093 1451 ntBASIC20.64■□□□□ 0.9
COL4A2P08572 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
COL4A2P08572 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL4A2P08572 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL4A2P08572 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC20.64■□□□□ 0.89
COL4A2P08572 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC20.64■□□□□ 0.89
COL4A2P08572 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
COL4A2P08572 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL4A2P08572 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL4A2P08572 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL4A2P08572 RBM17P1-201ENST00000453646 1190 ntBASIC20.64■□□□□ 0.89
COL4A2P08572 KRT18P35-201ENST00000510488 1269 ntBASIC20.64■□□□□ 0.89
COL4A2P08572 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL4A2P08572 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.64■□□□□ 0.89
COL4A2P08572 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COL4A2P08572 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL4A2P08572 HTR7P1-201ENST00000538670 1336 ntBASIC20.63■□□□□ 0.89
COL4A2P08572 GUSBP5-202ENST00000510805 1989 ntBASIC20.63■□□□□ 0.89
COL4A2P08572 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL4A2P08572 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.63■□□□□ 0.89
COL4A2P08572 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL4A2P08572 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL4A2P08572 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL4A2P08572 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COL4A2P08572 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COL4A2P08572 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms