Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 LSM12P1-201ENST00000411836 588 ntBASIC21.26■□□□□ 0.99
APOEP02649 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
APOEP02649 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC21.26■□□□□ 0.99
APOEP02649 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC21.26■□□□□ 0.99
APOEP02649 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC21.26■□□□□ 0.99
APOEP02649 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC21.26■□□□□ 0.99
APOEP02649 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
APOEP02649 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC21.26■□□□□ 0.99
APOEP02649 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
APOEP02649 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
APOEP02649 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC21.26■□□□□ 0.99
APOEP02649 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
APOEP02649 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
APOEP02649 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
APOEP02649 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC21.25■□□□□ 0.99
APOEP02649 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
APOEP02649 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC21.25■□□□□ 0.99
APOEP02649 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
APOEP02649 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC21.25■□□□□ 0.99
APOEP02649 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
APOEP02649 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
APOEP02649 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
APOEP02649 KRT18P68-201ENST00000392293 1000 ntBASIC21.25■□□□□ 0.99
APOEP02649 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
APOEP02649 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC21.25■□□□□ 0.99
APOEP02649 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC21.25■□□□□ 0.99
APOEP02649 EMC9-206ENST00000560403 872 ntTSL 2 BASIC21.25■□□□□ 0.99
APOEP02649 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC21.25■□□□□ 0.99
APOEP02649 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC21.25■□□□□ 0.99
APOEP02649 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
APOEP02649 AC092118.2-201ENST00000613495 667 ntBASIC21.25■□□□□ 0.99
APOEP02649 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC21.25■□□□□ 0.99
APOEP02649 AL589743.5-201ENST00000616611 1050 ntBASIC21.25■□□□□ 0.99
APOEP02649 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC21.25■□□□□ 0.99
APOEP02649 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
APOEP02649 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC21.25■□□□□ 0.99
APOEP02649 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
APOEP02649 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
APOEP02649 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC21.24■□□□□ 0.99
APOEP02649 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
APOEP02649 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
APOEP02649 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
APOEP02649 AC087633.2-202ENST00000565166 1439 ntBASIC21.24■□□□□ 0.99
APOEP02649 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC21.24■□□□□ 0.99
APOEP02649 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
APOEP02649 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
APOEP02649 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
APOEP02649 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC21.24■□□□□ 0.99
APOEP02649 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
APOEP02649 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC21.24■□□□□ 0.99
APOEP02649 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC21.24■□□□□ 0.99
APOEP02649 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
APOEP02649 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
APOEP02649 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
APOEP02649 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
APOEP02649 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
APOEP02649 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
APOEP02649 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC21.24■□□□□ 0.99
APOEP02649 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
APOEP02649 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
APOEP02649 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
APOEP02649 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
APOEP02649 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
APOEP02649 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
APOEP02649 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC21.23■□□□□ 0.99
APOEP02649 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC21.23■□□□□ 0.99
APOEP02649 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
APOEP02649 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
APOEP02649 SERPINH1P1-201ENST00000419794 1249 ntBASIC21.23■□□□□ 0.99
APOEP02649 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC21.23■□□□□ 0.99
APOEP02649 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC21.23■□□□□ 0.99
APOEP02649 AC133041.1-202ENST00000642053 222 ntBASIC21.23■□□□□ 0.99
APOEP02649 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
APOEP02649 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC21.23■□□□□ 0.99
APOEP02649 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
APOEP02649 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC21.23■□□□□ 0.99
APOEP02649 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
APOEP02649 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC21.23■□□□□ 0.99
APOEP02649 AC027702.1-201ENST00000563810 1770 ntBASIC21.23■□□□□ 0.99
APOEP02649 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
APOEP02649 GCK-205ENST00000437084 1385 ntTSL 5 BASIC21.23■□□□□ 0.99
APOEP02649 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC21.22■□□□□ 0.99
APOEP02649 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
APOEP02649 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC21.22■□□□□ 0.99
APOEP02649 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
APOEP02649 AC069152.1-201ENST00000438030 544 ntBASIC21.22■□□□□ 0.99
APOEP02649 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC21.22■□□□□ 0.99
APOEP02649 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC21.22■□□□□ 0.99
APOEP02649 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
APOEP02649 KRT17P1-201ENST00000399211 1546 ntBASIC21.22■□□□□ 0.99
APOEP02649 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
APOEP02649 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
APOEP02649 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
APOEP02649 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC21.22■□□□□ 0.99
APOEP02649 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
APOEP02649 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
APOEP02649 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
APOEP02649 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
APOEP02649 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
APOEP02649 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms