Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC25.08■■□□□ 1.61
COL4A1P02462 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC25.08■■□□□ 1.61
COL4A1P02462 AC011484.1-201ENST00000377652 1995 ntBASIC25.08■■□□□ 1.61
COL4A1P02462 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
COL4A1P02462 FBXW4P1-201ENST00000426721 2239 ntBASIC25.08■■□□□ 1.61
COL4A1P02462 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC25.08■■□□□ 1.61
COL4A1P02462 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC25.08■■□□□ 1.61
COL4A1P02462 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
COL4A1P02462 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
COL4A1P02462 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC25.08■■□□□ 1.6
COL4A1P02462 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC25.08■■□□□ 1.6
COL4A1P02462 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC25.08■■□□□ 1.6
COL4A1P02462 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC25.08■■□□□ 1.6
COL4A1P02462 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
COL4A1P02462 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
COL4A1P02462 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC25.07■■□□□ 1.6
COL4A1P02462 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC25.07■■□□□ 1.6
COL4A1P02462 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC25.07■■□□□ 1.6
COL4A1P02462 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC25.07■■□□□ 1.6
COL4A1P02462 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC25.07■■□□□ 1.6
COL4A1P02462 PTBP1P-201ENST00000554374 1601 ntBASIC25.07■■□□□ 1.6
COL4A1P02462 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC25.07■■□□□ 1.6
COL4A1P02462 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
COL4A1P02462 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
COL4A1P02462 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC25.07■■□□□ 1.6
COL4A1P02462 ABHD17AP6-201ENST00000458502 1044 ntBASIC25.07■■□□□ 1.6
COL4A1P02462 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC25.07■■□□□ 1.6
COL4A1P02462 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC25.06■■□□□ 1.6
COL4A1P02462 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC25.06■■□□□ 1.6
COL4A1P02462 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC25.06■■□□□ 1.6
COL4A1P02462 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC25.06■■□□□ 1.6
COL4A1P02462 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC25.06■■□□□ 1.6
COL4A1P02462 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC25.06■■□□□ 1.6
COL4A1P02462 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC25.06■■□□□ 1.6
COL4A1P02462 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
COL4A1P02462 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
COL4A1P02462 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC25.06■■□□□ 1.6
COL4A1P02462 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC25.06■■□□□ 1.6
COL4A1P02462 AC027702.1-201ENST00000563810 1770 ntBASIC25.06■■□□□ 1.6
COL4A1P02462 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
COL4A1P02462 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
COL4A1P02462 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC25.06■■□□□ 1.6
COL4A1P02462 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC25.06■■□□□ 1.6
COL4A1P02462 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC25.06■■□□□ 1.6
COL4A1P02462 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC25.06■■□□□ 1.6
COL4A1P02462 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC25.06■■□□□ 1.6
COL4A1P02462 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
COL4A1P02462 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
COL4A1P02462 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
COL4A1P02462 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
COL4A1P02462 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
COL4A1P02462 KRT8P36-201ENST00000489121 1440 ntBASIC25.06■■□□□ 1.6
COL4A1P02462 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
COL4A1P02462 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
COL4A1P02462 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
COL4A1P02462 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC25.05■■□□□ 1.6
COL4A1P02462 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC25.05■■□□□ 1.6
COL4A1P02462 PENK-204ENST00000518770 863 ntTSL 2 BASIC25.05■■□□□ 1.6
COL4A1P02462 GRAP-204ENST00000573099 846 ntTSL 3 BASIC25.05■■□□□ 1.6
COL4A1P02462 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC25.05■■□□□ 1.6
COL4A1P02462 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC25.05■■□□□ 1.6
COL4A1P02462 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC25.05■■□□□ 1.6
COL4A1P02462 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC25.05■■□□□ 1.6
COL4A1P02462 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC25.05■■□□□ 1.6
COL4A1P02462 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC25.05■■□□□ 1.6
COL4A1P02462 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC25.04■■□□□ 1.6
COL4A1P02462 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC25.04■■□□□ 1.6
COL4A1P02462 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC25.04■■□□□ 1.6
COL4A1P02462 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC25.04■■□□□ 1.6
COL4A1P02462 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
COL4A1P02462 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC25.04■■□□□ 1.6
COL4A1P02462 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC25.04■■□□□ 1.6
COL4A1P02462 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC25.04■■□□□ 1.6
COL4A1P02462 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC25.04■■□□□ 1.6
COL4A1P02462 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
COL4A1P02462 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
COL4A1P02462 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
COL4A1P02462 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
COL4A1P02462 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
COL4A1P02462 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC25.04■■□□□ 1.6
COL4A1P02462 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
COL4A1P02462 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC25.04■■□□□ 1.6
COL4A1P02462 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC25.04■■□□□ 1.6
COL4A1P02462 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC25.04■■□□□ 1.6
COL4A1P02462 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
COL4A1P02462 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
COL4A1P02462 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC25.04■■□□□ 1.6
COL4A1P02462 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
COL4A1P02462 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
COL4A1P02462 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC25.04■■□□□ 1.6
COL4A1P02462 DHDH-203ENST00000522614 776 ntTSL 5 BASIC25.04■■□□□ 1.6
COL4A1P02462 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC25.04■■□□□ 1.6
COL4A1P02462 AC110285.5-201ENST00000611501 352 ntBASIC25.04■■□□□ 1.6
COL4A1P02462 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC25.03■■□□□ 1.6
COL4A1P02462 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC25.03■■□□□ 1.6
COL4A1P02462 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC25.03■■□□□ 1.6
COL4A1P02462 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC25.03■■□□□ 1.6
COL4A1P02462 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC25.03■■□□□ 1.6
COL4A1P02462 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC25.03■■□□□ 1.6
COL4A1P02462 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC25.03■■□□□ 1.6
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms