Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CPSF4O95639 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC19.3■□□□□ 0.68
CPSF4O95639 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CPSF4O95639 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CPSF4O95639 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
CPSF4O95639 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
CPSF4O95639 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC19.3■□□□□ 0.68
CPSF4O95639 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CPSF4O95639 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CPSF4O95639 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CPSF4O95639 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CPSF4O95639 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
CPSF4O95639 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
CPSF4O95639 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CPSF4O95639 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CPSF4O95639 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC19.3■□□□□ 0.68
CPSF4O95639 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC19.3■□□□□ 0.68
CPSF4O95639 RAB43-208ENST00000615093 783 ntTSL 5 BASIC19.3■□□□□ 0.68
CPSF4O95639 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CPSF4O95639 AC004854.2-201ENST00000608450 1441 ntBASIC19.3■□□□□ 0.68
CPSF4O95639 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.3■□□□□ 0.68
CPSF4O95639 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC19.3■□□□□ 0.68
CPSF4O95639 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
CPSF4O95639 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC19.3■□□□□ 0.68
CPSF4O95639 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC19.3■□□□□ 0.68
CPSF4O95639 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CPSF4O95639 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
CPSF4O95639 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CPSF4O95639 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.29■□□□□ 0.68
CPSF4O95639 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CPSF4O95639 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CPSF4O95639 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CPSF4O95639 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CPSF4O95639 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CPSF4O95639 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CPSF4O95639 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CPSF4O95639 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
CPSF4O95639 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CPSF4O95639 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
CPSF4O95639 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC19.29■□□□□ 0.68
CPSF4O95639 KRT18P20-201ENST00000548986 1279 ntBASIC19.29■□□□□ 0.68
CPSF4O95639 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC19.29■□□□□ 0.68
CPSF4O95639 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC19.29■□□□□ 0.68
CPSF4O95639 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC19.29■□□□□ 0.68
CPSF4O95639 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CPSF4O95639 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CPSF4O95639 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC19.29■□□□□ 0.68
CPSF4O95639 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
CPSF4O95639 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CPSF4O95639 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
CPSF4O95639 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC19.29■□□□□ 0.68
CPSF4O95639 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
CPSF4O95639 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC19.29■□□□□ 0.68
CPSF4O95639 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
CPSF4O95639 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
CPSF4O95639 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CPSF4O95639 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CPSF4O95639 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CPSF4O95639 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
CPSF4O95639 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CPSF4O95639 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CPSF4O95639 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CPSF4O95639 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
CPSF4O95639 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CPSF4O95639 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CPSF4O95639 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CPSF4O95639 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CPSF4O95639 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CPSF4O95639 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CPSF4O95639 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
CPSF4O95639 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
CPSF4O95639 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CPSF4O95639 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CPSF4O95639 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC19.27■□□□□ 0.68
CPSF4O95639 SMG8-203ENST00000578922 2178 ntBASIC19.27■□□□□ 0.68
CPSF4O95639 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC19.27■□□□□ 0.68
CPSF4O95639 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CPSF4O95639 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC19.27■□□□□ 0.68
CPSF4O95639 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
CPSF4O95639 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CPSF4O95639 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC19.27■□□□□ 0.68
CPSF4O95639 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CPSF4O95639 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CPSF4O95639 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
CPSF4O95639 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
CPSF4O95639 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CPSF4O95639 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC19.27■□□□□ 0.68
CPSF4O95639 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC19.27■□□□□ 0.68
CPSF4O95639 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
CPSF4O95639 FGF8-207ENST00000618991 856 ntTSL 3 BASIC19.27■□□□□ 0.68
CPSF4O95639 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC19.27■□□□□ 0.68
CPSF4O95639 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC19.27■□□□□ 0.68
CPSF4O95639 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CPSF4O95639 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CPSF4O95639 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.67
CPSF4O95639 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
CPSF4O95639 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CPSF4O95639 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
CPSF4O95639 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC19.26■□□□□ 0.67
CPSF4O95639 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms