Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC21.41■■□□□ 1.02
RTN3O95197 POU5F1P3-201ENST00000428824 1078 ntBASIC21.41■■□□□ 1.02
RTN3O95197 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC21.41■■□□□ 1.02
RTN3O95197 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
RTN3O95197 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC21.41■■□□□ 1.02
RTN3O95197 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
RTN3O95197 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
RTN3O95197 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC21.41■■□□□ 1.02
RTN3O95197 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC21.41■■□□□ 1.02
RTN3O95197 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
RTN3O95197 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
RTN3O95197 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC21.41■■□□□ 1.02
RTN3O95197 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
RTN3O95197 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC21.41■■□□□ 1.02
RTN3O95197 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
RTN3O95197 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC21.4■■□□□ 1.02
RTN3O95197 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC21.4■■□□□ 1.02
RTN3O95197 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RTN3O95197 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RTN3O95197 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RTN3O95197 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RTN3O95197 CRK-204ENST00000574295 1391 ntTSL 5 BASIC21.4■■□□□ 1.02
RTN3O95197 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC21.4■■□□□ 1.02
RTN3O95197 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
RTN3O95197 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RTN3O95197 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC21.4■■□□□ 1.02
RTN3O95197 UNC93B5-201ENST00000530315 699 ntBASIC21.4■■□□□ 1.02
RTN3O95197 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
RTN3O95197 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC21.4■■□□□ 1.02
RTN3O95197 BRWD1-AS2-201ENST00000603064 1028 ntBASIC21.4■■□□□ 1.02
RTN3O95197 TMEM191A-211ENST00000637163 1067 ntBASIC21.4■■□□□ 1.02
RTN3O95197 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
RTN3O95197 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
RTN3O95197 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
RTN3O95197 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RTN3O95197 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC21.4■■□□□ 1.02
RTN3O95197 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.02
RTN3O95197 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.02
RTN3O95197 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
RTN3O95197 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
RTN3O95197 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
RTN3O95197 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
RTN3O95197 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC21.39■■□□□ 1.01
RTN3O95197 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC21.39■■□□□ 1.01
RTN3O95197 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC21.39■■□□□ 1.01
RTN3O95197 MIR2861-201ENST00000636310 90 ntBASIC21.39■■□□□ 1.01
RTN3O95197 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
RTN3O95197 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
RTN3O95197 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
RTN3O95197 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC21.39■■□□□ 1.01
RTN3O95197 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RTN3O95197 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RTN3O95197 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RTN3O95197 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RTN3O95197 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RTN3O95197 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC21.38■■□□□ 1.01
RTN3O95197 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
RTN3O95197 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RTN3O95197 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
RTN3O95197 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC21.38■■□□□ 1.01
RTN3O95197 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
RTN3O95197 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
RTN3O95197 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RTN3O95197 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RTN3O95197 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RTN3O95197 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC21.38■■□□□ 1.01
RTN3O95197 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
RTN3O95197 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
RTN3O95197 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RTN3O95197 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
RTN3O95197 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC21.37■■□□□ 1.01
RTN3O95197 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RTN3O95197 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RTN3O95197 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
RTN3O95197 AC092368.3-202ENST00000574180 1591 ntBASIC21.37■■□□□ 1.01
RTN3O95197 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC21.37■■□□□ 1.01
RTN3O95197 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RTN3O95197 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC21.37■■□□□ 1.01
RTN3O95197 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC21.37■■□□□ 1.01
RTN3O95197 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RTN3O95197 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
RTN3O95197 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
RTN3O95197 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
RTN3O95197 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RTN3O95197 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
RTN3O95197 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
RTN3O95197 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
RTN3O95197 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC21.36■■□□□ 1.01
RTN3O95197 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
RTN3O95197 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC21.36■■□□□ 1.01
RTN3O95197 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
RTN3O95197 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
RTN3O95197 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
RTN3O95197 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
RTN3O95197 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC21.36■■□□□ 1.01
RTN3O95197 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
RTN3O95197 ESRRAP1-201ENST00000400596 1257 ntBASIC21.36■■□□□ 1.01
RTN3O95197 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC21.36■■□□□ 1.01
RTN3O95197 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC21.36■■□□□ 1.01
RTN3O95197 PNMA6B-201ENST00000538162 1200 ntBASIC21.36■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms