Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC19.88■□□□□ 0.77
VPS4BO75351 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC19.88■□□□□ 0.77
VPS4BO75351 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC19.88■□□□□ 0.77
VPS4BO75351 KRT18P6-201ENST00000555540 1265 ntBASIC19.88■□□□□ 0.77
VPS4BO75351 AL121832.2-201ENST00000610979 668 ntBASIC19.88■□□□□ 0.77
VPS4BO75351 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
VPS4BO75351 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS4BO75351 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS4BO75351 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS4BO75351 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS4BO75351 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS4BO75351 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS4BO75351 USP39-204ENST00000409766 2033 ntTSL 2 BASIC19.87■□□□□ 0.77
VPS4BO75351 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS4BO75351 CPT2-209ENST00000636935 803 ntTSL 5 BASIC19.87■□□□□ 0.77
VPS4BO75351 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS4BO75351 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS4BO75351 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
VPS4BO75351 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
VPS4BO75351 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC19.86■□□□□ 0.77
VPS4BO75351 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
VPS4BO75351 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC19.86■□□□□ 0.77
VPS4BO75351 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
VPS4BO75351 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
VPS4BO75351 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC19.86■□□□□ 0.77
VPS4BO75351 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
VPS4BO75351 FAM201B-201ENST00000458407 597 ntBASIC19.86■□□□□ 0.77
VPS4BO75351 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC19.86■□□□□ 0.77
VPS4BO75351 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC19.86■□□□□ 0.77
VPS4BO75351 AC142086.2-201ENST00000569753 217 ntBASIC19.86■□□□□ 0.77
VPS4BO75351 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.86■□□□□ 0.77
VPS4BO75351 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS4BO75351 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC19.86■□□□□ 0.77
VPS4BO75351 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS4BO75351 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.85■□□□□ 0.77
VPS4BO75351 ME2-218ENST00000640965 2476 ntTSL 5 BASIC19.85■□□□□ 0.77
VPS4BO75351 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
VPS4BO75351 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS4BO75351 AC092720.2-201ENST00000602388 1665 ntBASIC19.85■□□□□ 0.77
VPS4BO75351 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
VPS4BO75351 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
VPS4BO75351 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
VPS4BO75351 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS4BO75351 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
VPS4BO75351 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS4BO75351 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS4BO75351 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC19.85■□□□□ 0.77
VPS4BO75351 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC19.85■□□□□ 0.77
VPS4BO75351 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS4BO75351 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
VPS4BO75351 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS4BO75351 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS4BO75351 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS4BO75351 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.85■□□□□ 0.77
VPS4BO75351 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
VPS4BO75351 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
VPS4BO75351 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS4BO75351 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
VPS4BO75351 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS4BO75351 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
VPS4BO75351 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19.84■□□□□ 0.77
VPS4BO75351 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS4BO75351 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC19.84■□□□□ 0.77
VPS4BO75351 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC19.84■□□□□ 0.77
VPS4BO75351 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.84■□□□□ 0.77
VPS4BO75351 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC19.84■□□□□ 0.77
VPS4BO75351 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS4BO75351 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
VPS4BO75351 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
VPS4BO75351 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS4BO75351 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC19.84■□□□□ 0.77
VPS4BO75351 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS4BO75351 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
VPS4BO75351 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
VPS4BO75351 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
VPS4BO75351 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
VPS4BO75351 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
VPS4BO75351 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC19.83■□□□□ 0.77
VPS4BO75351 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
VPS4BO75351 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
VPS4BO75351 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.83■□□□□ 0.77
VPS4BO75351 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
VPS4BO75351 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
VPS4BO75351 AC099778.1-201ENST00000568593 1911 ntBASIC19.83■□□□□ 0.77
VPS4BO75351 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC19.83■□□□□ 0.77
VPS4BO75351 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
VPS4BO75351 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
VPS4BO75351 AC083906.2-201ENST00000511578 360 ntBASIC19.83■□□□□ 0.77
VPS4BO75351 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC19.83■□□□□ 0.77
VPS4BO75351 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC19.83■□□□□ 0.77
VPS4BO75351 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
VPS4BO75351 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
VPS4BO75351 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
VPS4BO75351 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
VPS4BO75351 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC19.83■□□□□ 0.76
VPS4BO75351 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
VPS4BO75351 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.83■□□□□ 0.76
VPS4BO75351 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.76
VPS4BO75351 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS4BO75351 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms