Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PRKNO60260 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PRKNO60260 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PRKNO60260 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC18.92■□□□□ 0.62
PRKNO60260 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC18.92■□□□□ 0.62
PRKNO60260 ME2-216ENST00000639850 2331 ntTSL 5 BASIC18.92■□□□□ 0.62
PRKNO60260 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PRKNO60260 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
PRKNO60260 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC18.92■□□□□ 0.62
PRKNO60260 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PRKNO60260 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PRKNO60260 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PRKNO60260 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PRKNO60260 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PRKNO60260 STK25-205ENST00000405883 1904 ntTSL 2 BASIC18.92■□□□□ 0.62
PRKNO60260 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PRKNO60260 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
PRKNO60260 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
PRKNO60260 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC18.91■□□□□ 0.62
PRKNO60260 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC18.91■□□□□ 0.62
PRKNO60260 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
PRKNO60260 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
PRKNO60260 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PRKNO60260 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC18.91■□□□□ 0.62
PRKNO60260 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
PRKNO60260 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC18.91■□□□□ 0.62
PRKNO60260 CD99P1-205ENST00000527459 561 ntBASIC18.91■□□□□ 0.62
PRKNO60260 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC18.91■□□□□ 0.62
PRKNO60260 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC18.91■□□□□ 0.62
PRKNO60260 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
PRKNO60260 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
PRKNO60260 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PRKNO60260 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PRKNO60260 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
PRKNO60260 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
PRKNO60260 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC18.91■□□□□ 0.62
PRKNO60260 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC18.91■□□□□ 0.62
PRKNO60260 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC18.91■□□□□ 0.62
PRKNO60260 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PRKNO60260 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC18.91■□□□□ 0.62
PRKNO60260 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC18.91■□□□□ 0.62
PRKNO60260 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PRKNO60260 AC007225.1-201ENST00000566331 1836 ntBASIC18.9■□□□□ 0.62
PRKNO60260 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PRKNO60260 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PRKNO60260 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PRKNO60260 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
PRKNO60260 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC18.9■□□□□ 0.62
PRKNO60260 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PRKNO60260 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
PRKNO60260 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC18.9■□□□□ 0.62
PRKNO60260 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PRKNO60260 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC18.9■□□□□ 0.62
PRKNO60260 AL356652.1-201ENST00000615962 565 ntBASIC18.9■□□□□ 0.62
PRKNO60260 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PRKNO60260 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PRKNO60260 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
PRKNO60260 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PRKNO60260 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PRKNO60260 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PRKNO60260 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PRKNO60260 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
PRKNO60260 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PRKNO60260 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PRKNO60260 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
PRKNO60260 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.62
PRKNO60260 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PRKNO60260 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC18.89■□□□□ 0.61
PRKNO60260 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
PRKNO60260 NME6-213ENST00000451657 871 ntTSL 2 BASIC18.89■□□□□ 0.61
PRKNO60260 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
PRKNO60260 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC18.89■□□□□ 0.61
PRKNO60260 MIR4651-201ENST00000582622 73 ntBASIC18.89■□□□□ 0.61
PRKNO60260 MIR2861-201ENST00000636310 90 ntBASIC18.89■□□□□ 0.61
PRKNO60260 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
PRKNO60260 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
PRKNO60260 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC18.89■□□□□ 0.61
PRKNO60260 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
PRKNO60260 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PRKNO60260 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PRKNO60260 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC18.89■□□□□ 0.61
PRKNO60260 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PRKNO60260 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
PRKNO60260 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
PRKNO60260 AC092667.1-201ENST00000434301 2586 ntBASIC18.88■□□□□ 0.61
PRKNO60260 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
PRKNO60260 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
PRKNO60260 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PRKNO60260 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
PRKNO60260 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PRKNO60260 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PRKNO60260 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PRKNO60260 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PRKNO60260 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PRKNO60260 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC18.88■□□□□ 0.61
PRKNO60260 RNA5SP413-201ENST00000516373 109 ntBASIC18.88■□□□□ 0.61
PRKNO60260 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PRKNO60260 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PRKNO60260 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC18.88■□□□□ 0.61
PRKNO60260 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms