Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
NPHP1O15259 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
NPHP1O15259 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC25.62■■□□□ 1.69
NPHP1O15259 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC25.62■■□□□ 1.69
NPHP1O15259 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC25.62■■□□□ 1.69
NPHP1O15259 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC25.62■■□□□ 1.69
NPHP1O15259 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
NPHP1O15259 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
NPHP1O15259 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC25.62■■□□□ 1.69
NPHP1O15259 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
NPHP1O15259 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC25.62■■□□□ 1.69
NPHP1O15259 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC25.62■■□□□ 1.69
NPHP1O15259 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC25.62■■□□□ 1.69
NPHP1O15259 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
NPHP1O15259 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC25.62■■□□□ 1.69
NPHP1O15259 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC25.62■■□□□ 1.69
NPHP1O15259 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
NPHP1O15259 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC25.62■■□□□ 1.69
NPHP1O15259 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC25.62■■□□□ 1.69
NPHP1O15259 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC25.62■■□□□ 1.69
NPHP1O15259 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC25.62■■□□□ 1.69
NPHP1O15259 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
NPHP1O15259 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
NPHP1O15259 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC25.61■■□□□ 1.69
NPHP1O15259 AC079834.2-201ENST00000609776 1949 ntBASIC25.61■■□□□ 1.69
NPHP1O15259 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
NPHP1O15259 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC25.61■■□□□ 1.69
NPHP1O15259 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
NPHP1O15259 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
NPHP1O15259 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC25.61■■□□□ 1.69
NPHP1O15259 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
NPHP1O15259 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC25.61■■□□□ 1.69
NPHP1O15259 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC25.61■■□□□ 1.69
NPHP1O15259 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC25.61■■□□□ 1.69
NPHP1O15259 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC25.61■■□□□ 1.69
NPHP1O15259 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC25.61■■□□□ 1.69
NPHP1O15259 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC25.61■■□□□ 1.69
NPHP1O15259 AC113410.3-201ENST00000623366 203 ntBASIC25.61■■□□□ 1.69
NPHP1O15259 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
NPHP1O15259 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC25.61■■□□□ 1.69
NPHP1O15259 MOK-233ENST00000524214 1539 ntTSL 2 BASIC25.61■■□□□ 1.69
NPHP1O15259 ME2-208ENST00000638937 2471 ntTSL 5 BASIC25.61■■□□□ 1.69
NPHP1O15259 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC25.61■■□□□ 1.69
NPHP1O15259 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC25.61■■□□□ 1.69
NPHP1O15259 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC25.61■■□□□ 1.69
NPHP1O15259 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC25.61■■□□□ 1.69
NPHP1O15259 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC25.61■■□□□ 1.69
NPHP1O15259 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
NPHP1O15259 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC25.61■■□□□ 1.69
NPHP1O15259 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
NPHP1O15259 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC25.6■■□□□ 1.69
NPHP1O15259 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC25.6■■□□□ 1.69
NPHP1O15259 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC25.6■■□□□ 1.69
NPHP1O15259 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
NPHP1O15259 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
NPHP1O15259 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
NPHP1O15259 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
NPHP1O15259 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC25.6■■□□□ 1.69
NPHP1O15259 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC25.6■■□□□ 1.69
NPHP1O15259 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC25.6■■□□□ 1.69
NPHP1O15259 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC25.6■■□□□ 1.69
NPHP1O15259 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
NPHP1O15259 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC25.6■■□□□ 1.69
NPHP1O15259 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC25.6■■□□□ 1.69
NPHP1O15259 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC25.6■■□□□ 1.69
NPHP1O15259 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
NPHP1O15259 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
NPHP1O15259 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC25.59■■□□□ 1.69
NPHP1O15259 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
NPHP1O15259 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
NPHP1O15259 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
NPHP1O15259 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
NPHP1O15259 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC25.59■■□□□ 1.69
NPHP1O15259 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC25.59■■□□□ 1.69
NPHP1O15259 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC25.59■■□□□ 1.69
NPHP1O15259 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC25.59■■□□□ 1.69
NPHP1O15259 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
NPHP1O15259 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC25.59■■□□□ 1.69
NPHP1O15259 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
NPHP1O15259 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC25.59■■□□□ 1.69
NPHP1O15259 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC25.59■■□□□ 1.69
NPHP1O15259 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
NPHP1O15259 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC25.58■■□□□ 1.69
NPHP1O15259 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC25.58■■□□□ 1.69
NPHP1O15259 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC25.58■■□□□ 1.69
NPHP1O15259 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC25.58■■□□□ 1.69
NPHP1O15259 AC087499.1-201ENST00000418141 1075 ntBASIC25.58■■□□□ 1.69
NPHP1O15259 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC25.58■■□□□ 1.69
NPHP1O15259 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC25.58■■□□□ 1.69
NPHP1O15259 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
NPHP1O15259 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC25.58■■□□□ 1.69
NPHP1O15259 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
NPHP1O15259 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC25.58■■□□□ 1.68
NPHP1O15259 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.68
NPHP1O15259 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
NPHP1O15259 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC25.57■■□□□ 1.68
NPHP1O15259 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
NPHP1O15259 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC25.57■■□□□ 1.68
NPHP1O15259 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
NPHP1O15259 PENK-204ENST00000518770 863 ntTSL 2 BASIC25.57■■□□□ 1.68
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms