Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 KRT19P1-201ENST00000405746 1186 ntBASIC20.67■□□□□ 0.9
TCRBV7S3A2A0A539 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
TCRBV7S3A2A0A539 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
TCRBV7S3A2A0A539 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC20.67■□□□□ 0.9
TCRBV7S3A2A0A539 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
TCRBV7S3A2A0A539 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
TCRBV7S3A2A0A539 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC20.67■□□□□ 0.9
TCRBV7S3A2A0A539 CD44-222ENST00000526025 1052 ntTSL 2 BASIC20.67■□□□□ 0.9
TCRBV7S3A2A0A539 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC20.67■□□□□ 0.9
TCRBV7S3A2A0A539 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TCRBV7S3A2A0A539 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
TCRBV7S3A2A0A539 DPP3P2-201ENST00000416030 1696 ntBASIC20.67■□□□□ 0.9
TCRBV7S3A2A0A539 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
TCRBV7S3A2A0A539 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
TCRBV7S3A2A0A539 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC20.67■□□□□ 0.9
TCRBV7S3A2A0A539 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
TCRBV7S3A2A0A539 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TCRBV7S3A2A0A539 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC20.66■□□□□ 0.9
TCRBV7S3A2A0A539 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TCRBV7S3A2A0A539 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC20.66■□□□□ 0.9
TCRBV7S3A2A0A539 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TCRBV7S3A2A0A539 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.66■□□□□ 0.9
TCRBV7S3A2A0A539 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC20.66■□□□□ 0.9
TCRBV7S3A2A0A539 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC20.66■□□□□ 0.9
TCRBV7S3A2A0A539 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC20.66■□□□□ 0.9
TCRBV7S3A2A0A539 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC20.66■□□□□ 0.9
TCRBV7S3A2A0A539 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC20.66■□□□□ 0.9
TCRBV7S3A2A0A539 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TCRBV7S3A2A0A539 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
TCRBV7S3A2A0A539 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC20.66■□□□□ 0.9
TCRBV7S3A2A0A539 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TCRBV7S3A2A0A539 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TCRBV7S3A2A0A539 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TCRBV7S3A2A0A539 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC20.66■□□□□ 0.9
TCRBV7S3A2A0A539 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TCRBV7S3A2A0A539 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TCRBV7S3A2A0A539 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TCRBV7S3A2A0A539 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TCRBV7S3A2A0A539 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TCRBV7S3A2A0A539 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TCRBV7S3A2A0A539 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TCRBV7S3A2A0A539 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TCRBV7S3A2A0A539 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC20.65■□□□□ 0.9
TCRBV7S3A2A0A539 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TCRBV7S3A2A0A539 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TCRBV7S3A2A0A539 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
TCRBV7S3A2A0A539 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TCRBV7S3A2A0A539 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC20.65■□□□□ 0.9
TCRBV7S3A2A0A539 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
TCRBV7S3A2A0A539 UQCRFS1P1-201ENST00000435169 820 ntBASIC20.65■□□□□ 0.9
TCRBV7S3A2A0A539 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TCRBV7S3A2A0A539 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
TCRBV7S3A2A0A539 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TCRBV7S3A2A0A539 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TCRBV7S3A2A0A539 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.9
TCRBV7S3A2A0A539 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
TCRBV7S3A2A0A539 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC20.64■□□□□ 0.9
TCRBV7S3A2A0A539 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC20.64■□□□□ 0.9
TCRBV7S3A2A0A539 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
TCRBV7S3A2A0A539 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
TCRBV7S3A2A0A539 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
TCRBV7S3A2A0A539 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC20.64■□□□□ 0.89
TCRBV7S3A2A0A539 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
TCRBV7S3A2A0A539 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TCRBV7S3A2A0A539 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
TCRBV7S3A2A0A539 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
TCRBV7S3A2A0A539 SAPCD2P1-201ENST00000395413 1184 ntBASIC20.64■□□□□ 0.89
TCRBV7S3A2A0A539 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC20.64■□□□□ 0.89
TCRBV7S3A2A0A539 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
TCRBV7S3A2A0A539 MYCNOS-205ENST00000641950 531 ntBASIC20.64■□□□□ 0.89
TCRBV7S3A2A0A539 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
TCRBV7S3A2A0A539 LBX2-AS1-202ENST00000603175 2083 ntBASIC20.64■□□□□ 0.89
TCRBV7S3A2A0A539 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.64■□□□□ 0.89
TCRBV7S3A2A0A539 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC20.64■□□□□ 0.89
TCRBV7S3A2A0A539 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
TCRBV7S3A2A0A539 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
TCRBV7S3A2A0A539 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
TCRBV7S3A2A0A539 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
TCRBV7S3A2A0A539 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
TCRBV7S3A2A0A539 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TCRBV7S3A2A0A539 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC20.63■□□□□ 0.89
TCRBV7S3A2A0A539 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC20.63■□□□□ 0.89
TCRBV7S3A2A0A539 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC20.63■□□□□ 0.89
TCRBV7S3A2A0A539 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TCRBV7S3A2A0A539 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC20.63■□□□□ 0.89
TCRBV7S3A2A0A539 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TCRBV7S3A2A0A539 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
TCRBV7S3A2A0A539 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
TCRBV7S3A2A0A539 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
TCRBV7S3A2A0A539 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
TCRBV7S3A2A0A539 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
TCRBV7S3A2A0A539 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC20.63■□□□□ 0.89
TCRBV7S3A2A0A539 VMO1-204ENST00000441199 741 ntTSL 2 BASIC20.63■□□□□ 0.89
TCRBV7S3A2A0A539 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
TCRBV7S3A2A0A539 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
TCRBV7S3A2A0A539 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
TCRBV7S3A2A0A539 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC20.63■□□□□ 0.89
TCRBV7S3A2A0A539 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TCRBV7S3A2A0A539 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TCRBV7S3A2A0A539 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms