Protein–RNA interactions for Protein: Q9Y5I7

CLDN16, Claudin-16, humanhuman

Predictions only

Length 305 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN16Q9Y5I7 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLDN16Q9Y5I7 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CLDN16Q9Y5I7 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
CLDN16Q9Y5I7 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC19.01■□□□□ 0.63
CLDN16Q9Y5I7 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLDN16Q9Y5I7 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLDN16Q9Y5I7 NXN-202ENST00000537628 1340 ntTSL 3 BASIC19■□□□□ 0.63
CLDN16Q9Y5I7 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC19■□□□□ 0.63
CLDN16Q9Y5I7 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC19■□□□□ 0.63
CLDN16Q9Y5I7 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC19■□□□□ 0.63
CLDN16Q9Y5I7 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
CLDN16Q9Y5I7 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CLDN16Q9Y5I7 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
CLDN16Q9Y5I7 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19■□□□□ 0.63
CLDN16Q9Y5I7 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
CLDN16Q9Y5I7 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CLDN16Q9Y5I7 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC19■□□□□ 0.63
CLDN16Q9Y5I7 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC19■□□□□ 0.63
CLDN16Q9Y5I7 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
CLDN16Q9Y5I7 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC19■□□□□ 0.63
CLDN16Q9Y5I7 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CLDN16Q9Y5I7 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
CLDN16Q9Y5I7 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
CLDN16Q9Y5I7 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CLDN16Q9Y5I7 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CLDN16Q9Y5I7 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CLDN16Q9Y5I7 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC18.99■□□□□ 0.63
CLDN16Q9Y5I7 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC18.99■□□□□ 0.63
CLDN16Q9Y5I7 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC18.99■□□□□ 0.63
CLDN16Q9Y5I7 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC18.99■□□□□ 0.63
CLDN16Q9Y5I7 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CLDN16Q9Y5I7 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC18.99■□□□□ 0.63
CLDN16Q9Y5I7 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
CLDN16Q9Y5I7 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
CLDN16Q9Y5I7 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CLDN16Q9Y5I7 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CLDN16Q9Y5I7 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CLDN16Q9Y5I7 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC18.98■□□□□ 0.63
CLDN16Q9Y5I7 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLDN16Q9Y5I7 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLDN16Q9Y5I7 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLDN16Q9Y5I7 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC18.98■□□□□ 0.63
CLDN16Q9Y5I7 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLDN16Q9Y5I7 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CLDN16Q9Y5I7 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CLDN16Q9Y5I7 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
CLDN16Q9Y5I7 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC18.98■□□□□ 0.63
CLDN16Q9Y5I7 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CLDN16Q9Y5I7 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLDN16Q9Y5I7 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
CLDN16Q9Y5I7 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC18.98■□□□□ 0.63
CLDN16Q9Y5I7 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CLDN16Q9Y5I7 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC18.98■□□□□ 0.63
CLDN16Q9Y5I7 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CLDN16Q9Y5I7 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC18.98■□□□□ 0.63
CLDN16Q9Y5I7 KRT18P6-201ENST00000555540 1265 ntBASIC18.98■□□□□ 0.63
CLDN16Q9Y5I7 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CLDN16Q9Y5I7 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
CLDN16Q9Y5I7 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CLDN16Q9Y5I7 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLDN16Q9Y5I7 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLDN16Q9Y5I7 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC18.98■□□□□ 0.63
CLDN16Q9Y5I7 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC18.97■□□□□ 0.63
CLDN16Q9Y5I7 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLDN16Q9Y5I7 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLDN16Q9Y5I7 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLDN16Q9Y5I7 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC18.97■□□□□ 0.63
CLDN16Q9Y5I7 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLDN16Q9Y5I7 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLDN16Q9Y5I7 GATS-209ENST00000454084 1030 ntTSL 3 BASIC18.97■□□□□ 0.63
CLDN16Q9Y5I7 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLDN16Q9Y5I7 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC18.97■□□□□ 0.63
CLDN16Q9Y5I7 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC18.97■□□□□ 0.63
CLDN16Q9Y5I7 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC18.97■□□□□ 0.63
CLDN16Q9Y5I7 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
CLDN16Q9Y5I7 AC073314.1-201ENST00000568729 2216 ntBASIC18.97■□□□□ 0.63
CLDN16Q9Y5I7 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLDN16Q9Y5I7 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
CLDN16Q9Y5I7 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLDN16Q9Y5I7 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLDN16Q9Y5I7 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC18.96■□□□□ 0.63
CLDN16Q9Y5I7 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC18.96■□□□□ 0.63
CLDN16Q9Y5I7 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLDN16Q9Y5I7 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLDN16Q9Y5I7 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC18.96■□□□□ 0.63
CLDN16Q9Y5I7 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC18.96■□□□□ 0.63
CLDN16Q9Y5I7 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC18.96■□□□□ 0.63
CLDN16Q9Y5I7 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLDN16Q9Y5I7 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC18.96■□□□□ 0.63
CLDN16Q9Y5I7 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC18.96■□□□□ 0.63
CLDN16Q9Y5I7 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLDN16Q9Y5I7 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC18.96■□□□□ 0.63
CLDN16Q9Y5I7 PTBP1P-201ENST00000554374 1601 ntBASIC18.96■□□□□ 0.63
CLDN16Q9Y5I7 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLDN16Q9Y5I7 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC18.96■□□□□ 0.63
CLDN16Q9Y5I7 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
CLDN16Q9Y5I7 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLDN16Q9Y5I7 HES2-205ENST00000487437 968 ntTSL 3 BASIC18.95■□□□□ 0.62
CLDN16Q9Y5I7 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC18.95■□□□□ 0.62
CLDN16Q9Y5I7 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms