Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC21.27■■□□□ 1
PCDHA3Q9Y5H8 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PCDHA3Q9Y5H8 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PCDHA3Q9Y5H8 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC21.27■■□□□ 1
PCDHA3Q9Y5H8 SAPCD2P1-201ENST00000395413 1184 ntBASIC21.27■■□□□ 1
PCDHA3Q9Y5H8 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC21.27■■□□□ 1
PCDHA3Q9Y5H8 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC21.27■■□□□ 1
PCDHA3Q9Y5H8 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC21.27■■□□□ 1
PCDHA3Q9Y5H8 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
PCDHA3Q9Y5H8 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC21.27■■□□□ 1
PCDHA3Q9Y5H8 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PCDHA3Q9Y5H8 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
PCDHA3Q9Y5H8 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
PCDHA3Q9Y5H8 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC21.27■□□□□ 0.99
PCDHA3Q9Y5H8 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PCDHA3Q9Y5H8 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PCDHA3Q9Y5H8 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC21.26■□□□□ 0.99
PCDHA3Q9Y5H8 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC21.26■□□□□ 0.99
PCDHA3Q9Y5H8 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC21.26■□□□□ 0.99
PCDHA3Q9Y5H8 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC21.26■□□□□ 0.99
PCDHA3Q9Y5H8 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC21.26■□□□□ 0.99
PCDHA3Q9Y5H8 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
PCDHA3Q9Y5H8 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC21.26■□□□□ 0.99
PCDHA3Q9Y5H8 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
PCDHA3Q9Y5H8 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PCDHA3Q9Y5H8 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
PCDHA3Q9Y5H8 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
PCDHA3Q9Y5H8 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
PCDHA3Q9Y5H8 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC21.26■□□□□ 0.99
PCDHA3Q9Y5H8 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC21.26■□□□□ 0.99
PCDHA3Q9Y5H8 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
PCDHA3Q9Y5H8 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC21.26■□□□□ 0.99
PCDHA3Q9Y5H8 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PCDHA3Q9Y5H8 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
PCDHA3Q9Y5H8 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC21.25■□□□□ 0.99
PCDHA3Q9Y5H8 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PCDHA3Q9Y5H8 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC21.25■□□□□ 0.99
PCDHA3Q9Y5H8 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PCDHA3Q9Y5H8 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC21.25■□□□□ 0.99
PCDHA3Q9Y5H8 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PCDHA3Q9Y5H8 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PCDHA3Q9Y5H8 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
PCDHA3Q9Y5H8 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
PCDHA3Q9Y5H8 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC21.25■□□□□ 0.99
PCDHA3Q9Y5H8 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
PCDHA3Q9Y5H8 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
PCDHA3Q9Y5H8 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC21.25■□□□□ 0.99
PCDHA3Q9Y5H8 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PCDHA3Q9Y5H8 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC21.25■□□□□ 0.99
PCDHA3Q9Y5H8 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
PCDHA3Q9Y5H8 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC21.25■□□□□ 0.99
PCDHA3Q9Y5H8 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC21.25■□□□□ 0.99
PCDHA3Q9Y5H8 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC21.25■□□□□ 0.99
PCDHA3Q9Y5H8 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PCDHA3Q9Y5H8 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC21.25■□□□□ 0.99
PCDHA3Q9Y5H8 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
PCDHA3Q9Y5H8 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
PCDHA3Q9Y5H8 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC21.25■□□□□ 0.99
PCDHA3Q9Y5H8 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PCDHA3Q9Y5H8 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
PCDHA3Q9Y5H8 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC21.24■□□□□ 0.99
PCDHA3Q9Y5H8 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC21.24■□□□□ 0.99
PCDHA3Q9Y5H8 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PCDHA3Q9Y5H8 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
PCDHA3Q9Y5H8 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PCDHA3Q9Y5H8 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
PCDHA3Q9Y5H8 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC21.24■□□□□ 0.99
PCDHA3Q9Y5H8 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC21.24■□□□□ 0.99
PCDHA3Q9Y5H8 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC21.24■□□□□ 0.99
PCDHA3Q9Y5H8 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC21.24■□□□□ 0.99
PCDHA3Q9Y5H8 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PCDHA3Q9Y5H8 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
PCDHA3Q9Y5H8 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC21.23■□□□□ 0.99
PCDHA3Q9Y5H8 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PCDHA3Q9Y5H8 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
PCDHA3Q9Y5H8 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
PCDHA3Q9Y5H8 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PCDHA3Q9Y5H8 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
PCDHA3Q9Y5H8 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
PCDHA3Q9Y5H8 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
PCDHA3Q9Y5H8 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PCDHA3Q9Y5H8 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PCDHA3Q9Y5H8 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
PCDHA3Q9Y5H8 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PCDHA3Q9Y5H8 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC21.23■□□□□ 0.99
PCDHA3Q9Y5H8 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC21.23■□□□□ 0.99
PCDHA3Q9Y5H8 KRT18P61-201ENST00000585825 1298 ntBASIC21.23■□□□□ 0.99
PCDHA3Q9Y5H8 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PCDHA3Q9Y5H8 TFG-210ENST00000620299 1289 ntTSL 5 BASIC21.23■□□□□ 0.99
PCDHA3Q9Y5H8 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC21.23■□□□□ 0.99
PCDHA3Q9Y5H8 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC21.23■□□□□ 0.99
PCDHA3Q9Y5H8 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PCDHA3Q9Y5H8 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC21.23■□□□□ 0.99
PCDHA3Q9Y5H8 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC21.23■□□□□ 0.99
PCDHA3Q9Y5H8 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
PCDHA3Q9Y5H8 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
PCDHA3Q9Y5H8 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
PCDHA3Q9Y5H8 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC21.22■□□□□ 0.99
PCDHA3Q9Y5H8 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC21.22■□□□□ 0.99
PCDHA3Q9Y5H8 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms