Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC16.45■□□□□ 0.22
FOXA2Q9Y261 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC16.45■□□□□ 0.22
FOXA2Q9Y261 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC16.45■□□□□ 0.22
FOXA2Q9Y261 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA2Q9Y261 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC16.45■□□□□ 0.22
FOXA2Q9Y261 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA2Q9Y261 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA2Q9Y261 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA2Q9Y261 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA2Q9Y261 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA2Q9Y261 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA2Q9Y261 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA2Q9Y261 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
FOXA2Q9Y261 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC16.45■□□□□ 0.22
FOXA2Q9Y261 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC16.45■□□□□ 0.22
FOXA2Q9Y261 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
FOXA2Q9Y261 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA2Q9Y261 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA2Q9Y261 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC16.44■□□□□ 0.22
FOXA2Q9Y261 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA2Q9Y261 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC16.44■□□□□ 0.22
FOXA2Q9Y261 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA2Q9Y261 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA2Q9Y261 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA2Q9Y261 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC16.44■□□□□ 0.22
FOXA2Q9Y261 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC16.44■□□□□ 0.22
FOXA2Q9Y261 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC16.44■□□□□ 0.22
FOXA2Q9Y261 AC022517.1-201ENST00000592429 346 ntBASIC16.44■□□□□ 0.22
FOXA2Q9Y261 AL391422.3-201ENST00000603791 2761 ntBASIC16.44■□□□□ 0.22
FOXA2Q9Y261 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA2Q9Y261 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA2Q9Y261 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
FOXA2Q9Y261 ME2-218ENST00000640965 2476 ntTSL 5 BASIC16.44■□□□□ 0.22
FOXA2Q9Y261 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA2Q9Y261 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA2Q9Y261 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA2Q9Y261 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA2Q9Y261 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
FOXA2Q9Y261 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA2Q9Y261 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC16.44■□□□□ 0.22
FOXA2Q9Y261 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA2Q9Y261 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
FOXA2Q9Y261 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
FOXA2Q9Y261 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC16.43■□□□□ 0.22
FOXA2Q9Y261 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC16.43■□□□□ 0.22
FOXA2Q9Y261 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
FOXA2Q9Y261 AC099778.1-201ENST00000568593 1911 ntBASIC16.43■□□□□ 0.22
FOXA2Q9Y261 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
FOXA2Q9Y261 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
FOXA2Q9Y261 PARP1-202ENST00000366792 553 ntTSL 3 BASIC16.43■□□□□ 0.22
FOXA2Q9Y261 HSCB-202ENST00000398941 955 ntTSL 2 BASIC16.43■□□□□ 0.22
FOXA2Q9Y261 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
FOXA2Q9Y261 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC16.43■□□□□ 0.22
FOXA2Q9Y261 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC16.43■□□□□ 0.22
FOXA2Q9Y261 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC16.43■□□□□ 0.22
FOXA2Q9Y261 UBE2DNL-204ENST00000602536 740 ntBASIC16.43■□□□□ 0.22
FOXA2Q9Y261 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
FOXA2Q9Y261 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC16.43■□□□□ 0.22
FOXA2Q9Y261 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC16.43■□□□□ 0.22
FOXA2Q9Y261 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
FOXA2Q9Y261 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
FOXA2Q9Y261 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
FOXA2Q9Y261 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
FOXA2Q9Y261 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC16.43■□□□□ 0.22
FOXA2Q9Y261 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
FOXA2Q9Y261 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
FOXA2Q9Y261 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
FOXA2Q9Y261 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
FOXA2Q9Y261 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
FOXA2Q9Y261 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
FOXA2Q9Y261 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
FOXA2Q9Y261 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
FOXA2Q9Y261 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
FOXA2Q9Y261 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC16.42■□□□□ 0.22
FOXA2Q9Y261 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
FOXA2Q9Y261 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
FOXA2Q9Y261 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC16.42■□□□□ 0.22
FOXA2Q9Y261 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
FOXA2Q9Y261 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC16.42■□□□□ 0.22
FOXA2Q9Y261 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
FOXA2Q9Y261 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC16.42■□□□□ 0.22
FOXA2Q9Y261 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
FOXA2Q9Y261 SLC7A5P1-201ENST00000568957 537 ntBASIC16.42■□□□□ 0.22
FOXA2Q9Y261 MYCNOS-205ENST00000641950 531 ntBASIC16.42■□□□□ 0.22
FOXA2Q9Y261 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
FOXA2Q9Y261 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
FOXA2Q9Y261 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
FOXA2Q9Y261 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
FOXA2Q9Y261 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC16.42■□□□□ 0.22
FOXA2Q9Y261 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC16.42■□□□□ 0.22
FOXA2Q9Y261 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
FOXA2Q9Y261 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC16.42■□□□□ 0.22
FOXA2Q9Y261 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
FOXA2Q9Y261 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC16.41■□□□□ 0.22
FOXA2Q9Y261 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
FOXA2Q9Y261 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
FOXA2Q9Y261 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
FOXA2Q9Y261 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC16.41■□□□□ 0.22
FOXA2Q9Y261 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
FOXA2Q9Y261 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms